| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082672
Identifier: 99082672
GI number: 99082672
Start: 3001004
End: 3001426
Strand: Direct
Name: 99082672
Synonym: TM1040_2832
Alternate gene names: NA
Gene position: 3001004-3001426 (Clockwise)
Preceding gene: 99082671
Following gene: 99082673
Centisome position: 93.75
GC content: 53.66
Gene sequence:
>423_bases ATGGCGTATTGGCTGTTCAAATCCGAACCAAACACCTGGGGCTGGGACGATCAAGTCGCCAAAGGGGAAGCTGGTGAGGA ATGGGACGGCGTGCGCAACTACCAGGCCCGCAACTTCATGCGGGAAATGAAACTGGGCGACCGCGGATTCTTCTATCACT CATTGAAAGAAAAATCCGTGGTTGGCATTGTCGAGGTCTGCGCCAAATCCCACCCGGACAGCACAACAGATGATCCGCGT TGGGACTGCGTGGACATCAAAGCCATTCGCCCGTTTGTAAAACCGGTCTCCCTTGATCAGATCAAGTCGAACCCGATGCT TGAGAACATGGTTCTTGTCAAAAACTCGAGGCTCTCGGTGCAACCGGTGACAGATGCGGAGTGGCAAGAGATCTGCAAGA TGGGGGATACACCTGCAGATTGA
Upstream 100 bases:
>100_bases ACATGGCCGCCGGTGAAGCCTGGGCCGCAAACGACCCCTACAACAAGGCCGGACTCTTTGAGGCCGTTGAACTTATCACC TGGAAGAAGGTGATCGGCTG
Downstream 100 bases:
>100_bases CCCGGCGAGCAAAACTGGCATGCTGACTCTGACAAATGTCTGCGAGGAATGGCATGGAAATTCTCAGCGTAATTGCCGCG ACCATCGCGGCCTTTGTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MAYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSVVGIVEVCAKSHPDSTTDDPR WDCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSVQPVTDAEWQEICKMGDTPAD
Sequences:
>Translated_140_residues MAYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSVVGIVEVCAKSHPDSTTDDPR WDCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSVQPVTDAEWQEICKMGDTPAD >Mature_139_residues AYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSVVGIVEVCAKSHPDSTTDDPRW DCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSVQPVTDAEWQEICKMGDTPAD
Specific function: Unknown
COG id: COG2947
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI83267861, Length=159, Percent_Identity=35.8490566037736, Blast_Score=102, Evalue=8e-23, Organism=Homo sapiens, GI40806221, Length=159, Percent_Identity=35.8490566037736, Blast_Score=102, Evalue=8e-23, Organism=Homo sapiens, GI7661804, Length=159, Percent_Identity=35.8490566037736, Blast_Score=102, Evalue=8e-23, Organism=Homo sapiens, GI83267859, Length=94, Percent_Identity=40.4255319148936, Blast_Score=76, Evalue=8e-15, Organism=Homo sapiens, GI40806219, Length=94, Percent_Identity=40.4255319148936, Blast_Score=76, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16085; Mature: 15954
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSV CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHCCCCHH VGIVEVCAKSHPDSTTDDPRWDCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSV HHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCEEE QPVTDAEWQEICKMGDTPAD ECCCCHHHHHHHHCCCCCCC >Mature Secondary Structure AYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSV EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHCCCCHH VGIVEVCAKSHPDSTTDDPRWDCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSV HHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCEEE QPVTDAEWQEICKMGDTPAD ECCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA