Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082672

Identifier: 99082672

GI number: 99082672

Start: 3001004

End: 3001426

Strand: Direct

Name: 99082672

Synonym: TM1040_2832

Alternate gene names: NA

Gene position: 3001004-3001426 (Clockwise)

Preceding gene: 99082671

Following gene: 99082673

Centisome position: 93.75

GC content: 53.66

Gene sequence:

>423_bases
ATGGCGTATTGGCTGTTCAAATCCGAACCAAACACCTGGGGCTGGGACGATCAAGTCGCCAAAGGGGAAGCTGGTGAGGA
ATGGGACGGCGTGCGCAACTACCAGGCCCGCAACTTCATGCGGGAAATGAAACTGGGCGACCGCGGATTCTTCTATCACT
CATTGAAAGAAAAATCCGTGGTTGGCATTGTCGAGGTCTGCGCCAAATCCCACCCGGACAGCACAACAGATGATCCGCGT
TGGGACTGCGTGGACATCAAAGCCATTCGCCCGTTTGTAAAACCGGTCTCCCTTGATCAGATCAAGTCGAACCCGATGCT
TGAGAACATGGTTCTTGTCAAAAACTCGAGGCTCTCGGTGCAACCGGTGACAGATGCGGAGTGGCAAGAGATCTGCAAGA
TGGGGGATACACCTGCAGATTGA

Upstream 100 bases:

>100_bases
ACATGGCCGCCGGTGAAGCCTGGGCCGCAAACGACCCCTACAACAAGGCCGGACTCTTTGAGGCCGTTGAACTTATCACC
TGGAAGAAGGTGATCGGCTG

Downstream 100 bases:

>100_bases
CCCGGCGAGCAAAACTGGCATGCTGACTCTGACAAATGTCTGCGAGGAATGGCATGGAAATTCTCAGCGTAATTGCCGCG
ACCATCGCGGCCTTTGTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MAYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSVVGIVEVCAKSHPDSTTDDPR
WDCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSVQPVTDAEWQEICKMGDTPAD

Sequences:

>Translated_140_residues
MAYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSVVGIVEVCAKSHPDSTTDDPR
WDCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSVQPVTDAEWQEICKMGDTPAD
>Mature_139_residues
AYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSVVGIVEVCAKSHPDSTTDDPRW
DCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSVQPVTDAEWQEICKMGDTPAD

Specific function: Unknown

COG id: COG2947

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI83267861, Length=159, Percent_Identity=35.8490566037736, Blast_Score=102, Evalue=8e-23,
Organism=Homo sapiens, GI40806221, Length=159, Percent_Identity=35.8490566037736, Blast_Score=102, Evalue=8e-23,
Organism=Homo sapiens, GI7661804, Length=159, Percent_Identity=35.8490566037736, Blast_Score=102, Evalue=8e-23,
Organism=Homo sapiens, GI83267859, Length=94, Percent_Identity=40.4255319148936, Blast_Score=76, Evalue=8e-15,
Organism=Homo sapiens, GI40806219, Length=94, Percent_Identity=40.4255319148936, Blast_Score=76, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16085; Mature: 15954

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSV
CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHCCCCHH
VGIVEVCAKSHPDSTTDDPRWDCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSV
HHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCEEE
QPVTDAEWQEICKMGDTPAD
ECCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSV
EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHCCCCHH
VGIVEVCAKSHPDSTTDDPRWDCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSV
HHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCEEE
QPVTDAEWQEICKMGDTPAD
ECCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA