Click here to switch to the map view.

The map label for this gene is tdcF [C]

Identifier: 99082594

GI number: 99082594

Start: 2902654

End: 2903043

Strand: Direct

Name: tdcF [C]

Synonym: TM1040_2754

Alternate gene names: 99082594

Gene position: 2902654-2903043 (Clockwise)

Preceding gene: 99082593

Following gene: 99082598

Centisome position: 90.68

GC content: 61.54

Gene sequence:

>390_bases
ATGACTATCGAACGTATCGGCGCAGAGCGCACCGGCGCAGGTGGACAGAACCTGCCGTTTTCCCCTGCCACCCGCGCGGG
TGACTTCGTCTTTATCTCTGGTCAGGTCGCGATGAATGAGCGCGGTGAGATCGAGCCCGGCGGCATCGAGGCGCAGACCA
AGCGCACCATGGAAAACGTGATTGCCGTGCTGGCCCAGGCGGGTTGCACGCTGGATGACGTGGCAAAGGTGAACGTGTGG
CTCGATGATCCCCGCGATTTCTGGACCTTCAACCGCGTCTACGCGAGCTATTTCCCCAACGGCGCGCCATCGCGCTCCAC
TGTGCGCTCGCAGCTGATGGTGGATGCAAAGATCGAAATCGACGTCACCGCCTATAAGCCGCTGGGCTGA

Upstream 100 bases:

>100_bases
GATATGGCGCTGTGACGCCGATCCCAACCCTTTCCCAAACCCGCAGCGCGCTTGAAACCGCTCAGCGGGCCTAAACTCCC
CAACTATCAGGAGACTCCTC

Downstream 100 bases:

>100_bases
TCCCGCGCCACGTCACGCAACGATGCACAAAAAACGGGCCGCCCGATGGGGCGGCCCGAATTCTGTCTGGAAGGCGCGTT
TGACTTAGTCTTTAGGACCC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MTIERIGAERTGAGGQNLPFSPATRAGDFVFISGQVAMNERGEIEPGGIEAQTKRTMENVIAVLAQAGCTLDDVAKVNVW
LDDPRDFWTFNRVYASYFPNGAPSRSTVRSQLMVDAKIEIDVTAYKPLG

Sequences:

>Translated_129_residues
MTIERIGAERTGAGGQNLPFSPATRAGDFVFISGQVAMNERGEIEPGGIEAQTKRTMENVIAVLAQAGCTLDDVAKVNVW
LDDPRDFWTFNRVYASYFPNGAPSRSTVRSQLMVDAKIEIDVTAYKPLG
>Mature_128_residues
TIERIGAERTGAGGQNLPFSPATRAGDFVFISGQVAMNERGEIEPGGIEAQTKRTMENVIAVLAQAGCTLDDVAKVNVWL
DDPRDFWTFNRVYASYFPNGAPSRSTVRSQLMVDAKIEIDVTAYKPLG

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=113, Percent_Identity=33.6283185840708, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87082213, Length=113, Percent_Identity=34.5132743362832, Blast_Score=67, Evalue=5e-13,
Organism=Escherichia coli, GI87082396, Length=113, Percent_Identity=32.7433628318584, Blast_Score=64, Evalue=3e-12,
Organism=Escherichia coli, GI1787245, Length=119, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322138, Length=106, Percent_Identity=34.9056603773585, Blast_Score=77, Evalue=9e-16,
Organism=Saccharomyces cerevisiae, GI6320899, Length=84, Percent_Identity=34.5238095238095, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14055; Mature: 13924

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIERIGAERTGAGGQNLPFSPATRAGDFVFISGQVAMNERGEIEPGGIEAQTKRTMENV
CCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEECCCCCCCCCCCCHHHHHHHHHH
IAVLAQAGCTLDDVAKVNVWLDDPRDFWTFNRVYASYFPNGAPSRSTVRSQLMVDAKIEI
HHHHHHCCCCHHCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEEEEEEE
DVTAYKPLG
EEEECCCCC
>Mature Secondary Structure 
TIERIGAERTGAGGQNLPFSPATRAGDFVFISGQVAMNERGEIEPGGIEAQTKRTMENV
CHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEECCCCCCCCCCCCHHHHHHHHHH
IAVLAQAGCTLDDVAKVNVWLDDPRDFWTFNRVYASYFPNGAPSRSTVRSQLMVDAKIEI
HHHHHHCCCCHHCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEEEEEEE
DVTAYKPLG
EEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]