| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082570
Identifier: 99082570
GI number: 99082570
Start: 2873298
End: 2874818
Strand: Reverse
Name: 99082570
Synonym: TM1040_2730
Alternate gene names: NA
Gene position: 2874818-2873298 (Counterclockwise)
Preceding gene: 99082571
Following gene: 99082569
Centisome position: 89.81
GC content: 60.36
Gene sequence:
>1521_bases ATGCTCGAAGGTTTGATGATCGGCCTCTCTACGGCCTTTTCCGTTACAAACATCCTGATGGTGATCGGCGGCTGTCTGAT CGGGACATTCATTGGGATGCTGCCGGGGCTTGGCCCCATGTCCATCATTGCAATCATGATCCCCGTTGCGATCACGCTGG GCGATCCTTCTGCCGCGCTGATCTTGTTGGCCGGGGTCTATTATGGTGCGATCTTCGGGGGCTCGACCTCGTCGATCCTG CTCAATGCGCCGGGGGTGGCGGGCACCGTGGCCTCCAGTTTCGATGGCTATCCGATGGCGCGCGCAGGCATGGCCGGCAA GGCGCTGACCATTGCGGCGATCTCGTCCTTCATGGGGGGCACCATCGGTGCGATCCTGTTGATGGTCTTTGCGCCGATGC TGTCGACGGTTGCCCTCCTGTTCCACTCGGCCGAGTATTTCGCGCTGATGGTCGTGGGTCTTTCCGCGATTGCGGCCTTT GCAGGCACCGGCAATGTGGCCAAGGCCCTGATGATGACGCTTCTGGGTTTGATGATGGCCACGGTGGGCGAGGGCGCCTT GTTCAATATGCCGCGCTTCACCATGGGGCTGATGGATCTGCAATCTGGCTTCAGCTTCATCACGCTGGCGATGGCAATGT TTGCCCTGCCTGAAGCAATCTTTCTGGTAATGAACCCCAAACGCGCCGCCCAAGGGGGCGAGAACGGGGGCAAGATCACA GGCTTGCGGATCTCCGGCCAGGAGGCGCGCAAGATCGCGCCCGTGATCGGACGCCAGTCCATCCAGGGCTTCTTTATCGG GGTGCTCCCGGGCGCAGGCGCGACGATTGCGTCCTTCCTCGGGTATGCGGTGGAGCGCAACATTGCCACTGAATCCGAGC AAAAGGAGTTCGGCAAAGGCTCCATCAAGGGGCTGGCCGCGCCAGAGACCGCAAACAATGCAGCCTGTACCGGTTCGTTT GTACCGCTCCTGACGCTGGGTATTCCGGGATCCGGCACCACGGCGATCCTGTTGGGGGCGCTCATCGCACTCAATGTGAC GCCGGGGCCGCGGCTAATGGTGGACAGCCCGCATATCTTCTGGGCGGTCATCATCTCGATGTATATCGGCAACCTCGTGC TCTTGGTTCTGAACCTGCCGCTCATCCCCTATATCGCCAAAGTCCTGTCGATCCCGCGCAACTATCTCATTCCGTTCATT CTGTTCTTCACCCTTATGGGATCCTACATCGGGCAGAACAACGCGACAGAGCTGTTAATCCTCGTGGGCTTCGGGATCTG CGCGACAGTGCTGCGGTTTGCGGATTATCCGCTGGCGCCTCTGCTCATCGGCTTCATTCTGGGGCGGATGCTGGAGGATA ATTTTGCCCGCTCGATGCAGATCTATGACGGGGTGTCCTTCATTCTGGACCGTCCGATGACGCTAGGTCTGCTGGTGCTC GCCATCCTGTTGGTGATCGTGCCGAGCTATCGGGCCCGCCGTGCCCGCGCCCGTGCTGCCGGGGTGGCTGATGGGGATTA A
Upstream 100 bases:
>100_bases CGCGGCCCTTGCCACCGGCATCGTCTGGTATCTCGTTGAGGGCGTGCTGGGCATCTTCTTGCGGCCCTTGCCGTTCTTTC TCGGATAATCGGAGGCTCAG
Downstream 100 bases:
>100_bases ACCGCTCTCGGGTGTTCGGGTCCTCGACCTGACCAATGTGCTAGCAGGGCCGTATTGCTGTTATCAGCTGGCCCTGTTGG GGGCAGAAGTCATCAAGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: ORFZ2 [H]
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAALILLAGVYYGAIFGGSTSSIL LNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGGTIGAILLMVFAPMLSTVALLFHSAEYFALMVVGLSAIAAF AGTGNVAKALMMTLLGLMMATVGEGALFNMPRFTMGLMDLQSGFSFITLAMAMFALPEAIFLVMNPKRAAQGGENGGKIT GLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFLGYAVERNIATESEQKEFGKGSIKGLAAPETANNAACTGSF VPLLTLGIPGSGTTAILLGALIALNVTPGPRLMVDSPHIFWAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFI LFFTLMGSYIGQNNATELLILVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVL AILLVIVPSYRARRARARAAGVADGD
Sequences:
>Translated_506_residues MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAALILLAGVYYGAIFGGSTSSIL LNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGGTIGAILLMVFAPMLSTVALLFHSAEYFALMVVGLSAIAAF AGTGNVAKALMMTLLGLMMATVGEGALFNMPRFTMGLMDLQSGFSFITLAMAMFALPEAIFLVMNPKRAAQGGENGGKIT GLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFLGYAVERNIATESEQKEFGKGSIKGLAAPETANNAACTGSF VPLLTLGIPGSGTTAILLGALIALNVTPGPRLMVDSPHIFWAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFI LFFTLMGSYIGQNNATELLILVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVL AILLVIVPSYRARRARARAAGVADGD >Mature_506_residues MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAALILLAGVYYGAIFGGSTSSIL LNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGGTIGAILLMVFAPMLSTVALLFHSAEYFALMVVGLSAIAAF AGTGNVAKALMMTLLGLMMATVGEGALFNMPRFTMGLMDLQSGFSFITLAMAMFALPEAIFLVMNPKRAAQGGENGGKIT GLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFLGYAVERNIATESEQKEFGKGSIKGLAAPETANNAACTGSF VPLLTLGIPGSGTTAILLGALIALNVTPGPRLMVDSPHIFWAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFI LFFTLMGSYIGQNNATELLILVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVL AILLVIVPSYRARRARARAAGVADGD
Specific function: Unknown
COG id: COG3333
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002823 [H]
Pfam domain/function: PF01970 DUF112 [H]
EC number: NA
Molecular weight: Translated: 52670; Mature: 52670
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAAL CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCHHHH ILLAGVYYGAIFGGSTSSILLNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGG HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHCH TIGAILLMVFAPMLSTVALLFHSAEYFALMVVGLSAIAAFAGTGNVAKALMMTLLGLMMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH TVGEGALFNMPRFTMGLMDLQSGFSFITLAMAMFALPEAIFLVMNPKRAAQGGENGGKIT HCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEECCHHHHCCCCCCCEEE GLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFLGYAVERNIATESEQKEFGKG EEEECCHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCC SIKGLAAPETANNAACTGSFVPLLTLGIPGSGTTAILLGALIALNVTPGPRLMVDSPHIF CCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCHHHHHHHHHHHEECCCCCEEEECCCHHH WAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFILFFTLMGSYIGQNNATELLI HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH LVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH AILLVIVPSYRARRARARAAGVADGD HHHHHHHCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAAL CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCHHHH ILLAGVYYGAIFGGSTSSILLNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGG HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHCH TIGAILLMVFAPMLSTVALLFHSAEYFALMVVGLSAIAAFAGTGNVAKALMMTLLGLMMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH TVGEGALFNMPRFTMGLMDLQSGFSFITLAMAMFALPEAIFLVMNPKRAAQGGENGGKIT HCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEECCHHHHCCCCCCCEEE GLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFLGYAVERNIATESEQKEFGKG EEEECCHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCC SIKGLAAPETANNAACTGSFVPLLTLGIPGSGTTAILLGALIALNVTPGPRLMVDSPHIF CCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCHHHHHHHHHHHEECCCCCEEEECCCHHH WAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFILFFTLMGSYIGQNNATELLI HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH LVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH AILLVIVPSYRARRARARAAGVADGD HHHHHHHCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8672817 [H]