| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082551
Identifier: 99082551
GI number: 99082551
Start: 2855588
End: 2856346
Strand: Direct
Name: 99082551
Synonym: TM1040_2711
Alternate gene names: NA
Gene position: 2855588-2856346 (Clockwise)
Preceding gene: 99082550
Following gene: 99082555
Centisome position: 89.21
GC content: 63.9
Gene sequence:
>759_bases ATGATGACGCCTTTTCCCTACGAGATCGCAGAGGATCCGCGCCCGCGCCTGGGGCTCATTGCCTTGCAGGTGGATGAAAC CATCGAAGAGGATTTTCGGGTAATGTTCCCGCGCCAGGCTGCGCGGCTACATGTGAGCCGGGTGCCATCGGGGGCAGAGC TCACTCCTGAGACCATCGCCGGGATGGAAGACGATCTGCCGGCGGCTGCCCGCCTGCTACCGCCCGCGGCGCGCTTTGAG GTCATCGCCTACGGCTGCACGTCGGGAACCGGCCAGATCGGCGTCGAGCGTGTCGCAGAGTTGATCCAGACAGGCGCCAC CACCAAGGCGGTCAGCAATCCGCTGAGCGCTGCTATAGCCGCTTTGAACGCGCTGGGGGTCTCGCGTGTCGGGATCGTCT CGCCCTATATTGACGCCGTGGCCGCGCCGATCCGTGCAGCATTTGTTGACGCGGGCCTATCGGTGCCTGATATGCTCGGG TTTGGCGAGGAAGTGGAGGCACGCGTCGCCCGGATCGCACCCCGGTCCATTTGCGCTGCGGCCCATGCGCTCGGCGAGCG CAGCACGCTAGATGCGGTGTTTCTCTCCTGCACCAACCTACGCACGCTTGATGTGATCCCGCTGCTCGAACAGCAACTTG GCCTTCCGGTTCTCAGCTCCAATCAGGTCCTGGCTTGGCACATGGCAGCGTTGGCGGGTCTTGAGCTTGATGATCTCGAA GTGCCGGGGCAGCTTGGCAAAAAGGCGGCGCAGCCCTGA
Upstream 100 bases:
>100_bases GCGCGGATCGGATTCTCGTGCAGGAGGAGAACATCGTCCTACGCGACAGCGGCGCGGAGCTCTTGTCCCCGCGCGCACCC GCAGAATTGCCGGAGCTGCT
Downstream 100 bases:
>100_bases GCCACGCCGCCCTTCTGATGCGTCCCCCGGAGAGGGCCCGGAGAGGGCGTTTAGACGCGCACCATGTCGCGCGGCATCTC GGAGAAGATCTCCGCGCCGT
Product: Asp/Glu racemase
Products: NA
Alternate protein names: Asp/Glu/Hydantoin Racemase; Arylmalonate Decarboxylase; Asp/Glu/Hydantoin Racemase Family Protein; Decarboxylase; Ectoine Utilization Protein EutA; Maleate Cis-Trans Isomerase; Arylmalonate Decarboxylase Protein; Asp/Glu/Hydantoin Racemase Superfamily; Asp/Glu/Hydantoin Racemase Family; Racemase; Isomerase; Pyridoxal-5-Phosphate-Dependent Beta Subunit
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIAGMEDDLPAAARLLPPAARFE VIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIAALNALGVSRVGIVSPYIDAVAAPIRAAFVDAGLSVPDMLG FGEEVEARVARIAPRSICAAAHALGERSTLDAVFLSCTNLRTLDVIPLLEQQLGLPVLSSNQVLAWHMAALAGLELDDLE VPGQLGKKAAQP
Sequences:
>Translated_252_residues MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIAGMEDDLPAAARLLPPAARFE VIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIAALNALGVSRVGIVSPYIDAVAAPIRAAFVDAGLSVPDMLG FGEEVEARVARIAPRSICAAAHALGERSTLDAVFLSCTNLRTLDVIPLLEQQLGLPVLSSNQVLAWHMAALAGLELDDLE VPGQLGKKAAQP >Mature_252_residues MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIAGMEDDLPAAARLLPPAARFE VIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIAALNALGVSRVGIVSPYIDAVAAPIRAAFVDAGLSVPDMLG FGEEVEARVARIAPRSICAAAHALGERSTLDAVFLSCTNLRTLDVIPLLEQQLGLPVLSSNQVLAWHMAALAGLELDDLE VPGQLGKKAAQP
Specific function: Unknown
COG id: COG3473
COG function: function code Q; Maleate cis-trans isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26552; Mature: 26552
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS00136 SUBTILASE_ASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIA CCCCCCCHHCCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHC GMEDDLPAAARLLPPAARFEVIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIA CCCCCCCHHHHHCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH ALNALGVSRVGIVSPYIDAVAAPIRAAFVDAGLSVPDMLGFGEEVEARVARIAPRSICAA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCHHHHHHH AHALGERSTLDAVFLSCTNLRTLDVIPLLEQQLGLPVLSSNQVLAWHMAALAGLELDDLE HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCCCCCCC VPGQLGKKAAQP CCHHHHHHCCCC >Mature Secondary Structure MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIA CCCCCCCHHCCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHC GMEDDLPAAARLLPPAARFEVIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIA CCCCCCCHHHHHCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH ALNALGVSRVGIVSPYIDAVAAPIRAAFVDAGLSVPDMLGFGEEVEARVARIAPRSICAA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCHHHHHHH AHALGERSTLDAVFLSCTNLRTLDVIPLLEQQLGLPVLSSNQVLAWHMAALAGLELDDLE HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCCCCCCC VPGQLGKKAAQP CCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA