Click here to switch to the map view.

The map label for this gene is ygeX [H]

Identifier: 99082549

GI number: 99082549

Start: 2853377

End: 2854435

Strand: Direct

Name: ygeX [H]

Synonym: TM1040_2709

Alternate gene names: 99082549

Gene position: 2853377-2854435 (Clockwise)

Preceding gene: 99082547

Following gene: 99082550

Centisome position: 89.14

GC content: 64.78

Gene sequence:

>1059_bases
ATGCCCGTCACCGTGTCCAACCCCCACCGAGGTCAGGGTCTCTCCCTCGACGCACCGTTTCCCTGCGAGGATGCCGGGGC
TGTGACACGGCTGTTGCAACGCTGTCCCGCGCATCAGGAGACACCGCTTTTGTCCGTGCCGACGCTGGCCGCGTTCTGTG
GCGTCGCCAAGATCCACCTGAAGGATGAGCGCAACCGCATGGGGCTTGGCAGTTTCAAAGCGCTGGGCGCTGCACATGCC
ATTGCCCGGGCAGCACAAGAGGTGGTCGAAGGCGACAGCTGGACAACAGCGCTCAAGGGACGAACTTTTGTGACCGCTAG
CGCTGGCAATCACGGTCTGTCGGTTGCTGCGGGTGCCGCACTCTTTGGCGCGCAGGCGGTGATCTACCTTTCCGAAACCG
TGCCAGAAGGTTTTGCGGCGCGGCTGCGTGCCAAGGGGGCCGAGGTGGTGCGCGCGGGCGCGGACTACGAGGCCAGCATG
GTCGCGGCAGAAACGGCGGCAGAGGAAAACGGCTGGACATTGCTCTCGGACAGCTCCTGGCCGGGCTATACCGAACTCCC
CTATCGGGTCATGGAAGGCTATCTGCAAATGGCTGCGGAGGTTGCGCAGCAGGTACCTGAACCACCCACACACATTCTGC
TGCAGGCCGGGGTCGGTGGGCTGGCCGCCGCTGTTGCCGCCCATGCGCGCCGGGTCTGGGGCGATGCGCCACAGATCATC
GTGGTCGAACCCGAAGCCGCCCCTGCACTTGTCGAGAGCATCAAAGCTGGCGCAGTGGTCGAGACCAAAGGTCCGGTCTC
TGCAATGGGACGGCTTGATTGCAAAACGCCGTCGATGATTGCGCTTCAGGGGCTCGCACGGGACGCCGACCTGTTTGTGA
CCCTCACCGAAGCTGAGGCCGCAGCCGCCGTGGCCACGCTCGAGGCAGAAGGCTTGGCAACCACGCCCTCTGGAGGGGCG
GGCATCGCAGCCTTGATCGCCGGTCTGGCGCTACCGCAAGACGCGCGCGTATTTGCGATCCTCAGCGAAGGCCCGGAAGA
AGGAACAGGCGATGCCTGA

Upstream 100 bases:

>100_bases
GCACAGACGGGCCGAAATTCGGCCCAATTGCCACGGAGAAATCCGGGATACGCCGTGCCGAGCGCGTTAGGTTGGCAGGC
AAAGAACAGGAGCCCGCATC

Downstream 100 bases:

>100_bases
GACCTCCTTGATCTTTCCCGCGGCAGAATACCGAGGTCGCGTTGCGCGCCTTCAGGAGCATATGACTGCAGAGGGCGTAG
ATGCGCTCTTGTTGACCACG

Product: pyridoxal-5'-phosphate-dependent enzyme, beta subunit

Products: NA

Alternate protein names: Diaminopropionatase; Alpha,beta-diaminopropionate ammonia-lyase [H]

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MPVTVSNPHRGQGLSLDAPFPCEDAGAVTRLLQRCPAHQETPLLSVPTLAAFCGVAKIHLKDERNRMGLGSFKALGAAHA
IARAAQEVVEGDSWTTALKGRTFVTASAGNHGLSVAAGAALFGAQAVIYLSETVPEGFAARLRAKGAEVVRAGADYEASM
VAAETAAEENGWTLLSDSSWPGYTELPYRVMEGYLQMAAEVAQQVPEPPTHILLQAGVGGLAAAVAAHARRVWGDAPQII
VVEPEAAPALVESIKAGAVVETKGPVSAMGRLDCKTPSMIALQGLARDADLFVTLTEAEAAAAVATLEAEGLATTPSGGA
GIAALIAGLALPQDARVFAILSEGPEEGTGDA

Sequences:

>Translated_352_residues
MPVTVSNPHRGQGLSLDAPFPCEDAGAVTRLLQRCPAHQETPLLSVPTLAAFCGVAKIHLKDERNRMGLGSFKALGAAHA
IARAAQEVVEGDSWTTALKGRTFVTASAGNHGLSVAAGAALFGAQAVIYLSETVPEGFAARLRAKGAEVVRAGADYEASM
VAAETAAEENGWTLLSDSSWPGYTELPYRVMEGYLQMAAEVAQQVPEPPTHILLQAGVGGLAAAVAAHARRVWGDAPQII
VVEPEAAPALVESIKAGAVVETKGPVSAMGRLDCKTPSMIALQGLARDADLFVTLTEAEAAAAVATLEAEGLATTPSGGA
GIAALIAGLALPQDARVFAILSEGPEEGTGDA
>Mature_351_residues
PVTVSNPHRGQGLSLDAPFPCEDAGAVTRLLQRCPAHQETPLLSVPTLAAFCGVAKIHLKDERNRMGLGSFKALGAAHAI
ARAAQEVVEGDSWTTALKGRTFVTASAGNHGLSVAAGAALFGAQAVIYLSETVPEGFAARLRAKGAEVVRAGADYEASMV
AAETAAEENGWTLLSDSSWPGYTELPYRVMEGYLQMAAEVAQQVPEPPTHILLQAGVGGLAAAVAAHARRVWGDAPQIIV
VEPEAAPALVESIKAGAVVETKGPVSAMGRLDCKTPSMIALQGLARDADLFVTLTEAEAAAAVATLEAEGLATTPSGGAG
IAALIAGLALPQDARVFAILSEGPEEGTGDA

Specific function: Catalyzes the alpha,beta-elimination reaction of both L- and D-alpha,beta-diaminopropionate, the most suitable substrates to form pyruvate and ammonia. The L- and D-isomers of serine are also degraded, though slowly; it is the only serine dehydratase whic

COG id: COG1171

COG function: function code E; Threonine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789235, Length=360, Percent_Identity=30.8333333333333, Blast_Score=154, Evalue=9e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010081
- InterPro:   IPR019871
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.3.1.15 [H]

Molecular weight: Translated: 36015; Mature: 35884

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVTVSNPHRGQGLSLDAPFPCEDAGAVTRLLQRCPAHQETPLLSVPTLAAFCGVAKIHL
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHCEEEEEE
KDERNRMGLGSFKALGAAHAIARAAQEVVEGDSWTTALKGRTFVTASAGNHGLSVAAGAA
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCCHHHHHHH
LFGAQAVIYLSETVPEGFAARLRAKGAEVVRAGADYEASMVAAETAAEENGWTLLSDSSW
HHHCEEEEEEECCCCHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHCCCCCCEEEECCCC
PGYTELPYRVMEGYLQMAAEVAQQVPEPPTHILLQAGVGGLAAAVAAHARRVWGDAPQII
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCCCCEE
VVEPEAAPALVESIKAGAVVETKGPVSAMGRLDCKTPSMIALQGLARDADLFVTLTEAEA
EECCCCCHHHHHHHHCCEEEECCCCHHHHCCCCCCCCCHHHHHHCCCCCEEEEEEECHHH
AAAVATLEAEGLATTPSGGAGIAALIAGLALPQDARVFAILSEGPEEGTGDA
HHHHHEEECCCCEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
PVTVSNPHRGQGLSLDAPFPCEDAGAVTRLLQRCPAHQETPLLSVPTLAAFCGVAKIHL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHCEEEEEE
KDERNRMGLGSFKALGAAHAIARAAQEVVEGDSWTTALKGRTFVTASAGNHGLSVAAGAA
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCCHHHHHHH
LFGAQAVIYLSETVPEGFAARLRAKGAEVVRAGADYEASMVAAETAAEENGWTLLSDSSW
HHHCEEEEEEECCCCHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHCCCCCCEEEECCCC
PGYTELPYRVMEGYLQMAAEVAQQVPEPPTHILLQAGVGGLAAAVAAHARRVWGDAPQII
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCCCCEE
VVEPEAAPALVESIKAGAVVETKGPVSAMGRLDCKTPSMIALQGLARDADLFVTLTEAEA
EECCCCCHHHHHHHHCCEEEECCCCHHHHCCCCCCCCCHHHHHHCCCCCEEEEEEECHHH
AAAVATLEAEGLATTPSGGAGIAALIAGLALPQDARVFAILSEGPEEGTGDA
HHHHHEEECCCCEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]