| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082547
Identifier: 99082547
GI number: 99082547
Start: 2851063
End: 2852646
Strand: Direct
Name: 99082547
Synonym: TM1040_2707
Alternate gene names: NA
Gene position: 2851063-2852646 (Clockwise)
Preceding gene: 99082546
Following gene: 99082549
Centisome position: 89.07
GC content: 61.17
Gene sequence:
>1584_bases ATGAGGGATGGGAGTTATACCTACAAGCTGTTTCACCGCAGCGACTTTAGCGCGTTCTGGGCGCTGTTCACCGACAACCT TGTCAATCTGATGGTGCTTGCGGGCATCTGTCAGTTCGTTTTTCAGATGCCTGCCGATATCGTCTATGGCCGTATCGTTC CAGGTGCGGGTGTAGCGATCCTTGCCGGGATCGTCGCCTATGTGGCGCTTGCCAAACGTGCCGCGCAGGCGCACGGGCGC GATGTCACCGCCCTGCCCTATGGCATCTCCACACCGGTGATGTTTGTCTATCTCTTTGGCGTGATTGGTCCGATCTACTG GGCCACCAATGATCCGCTGCTGGCCTGGCAGGTTGGCATTGGGGCCGGATTCATGGGCGGGATCGTGGCTGCGCTGGGCG CTGTGGTCGGTCCGTGGCTCAAACGTGTGACACCGCGTGCGGGTATGCTCGGCACGCTCTGCGGGATTGCGCTTGTGTTT ATCGGCTCGGTACCGCTGGCGACCGTGTTCGAGAACCCGTTCATCGGCTTTGCATCGATGATCATCATTCTCTGGGGCCT CGTGGGGCGATTTCGCCTGCCCTACAACATTCCTGCGGGCCTTCTGGCACTCATCGTCGGCACCTTGGTGGCGCTGATGC TGGGCACCTCGACCCTCAGCCTTGAGGGCATCGGGTTCTATCCGCCCCTGCCCTATCTCGGCGATCTCATTGCGGGCGTT CAGTATCTCTTTGCCAATCCCGAGCTGTTCCTGGTGCTGGTGCCAGTACAGATCTACAACTTCATCGAAACCATGAACAA CGTCGAGAGCGCCGAGGCTGCGGGCGATCACTACCCGGTGGCCACCTGCCAGATCACCGATGGCGTCGGCACCATGATCG GTGCGGTCTTTGGCTCGCCGTTTCCCACCACGGCCTATATCGGCCACCCGGCCTACAAGCGCATGGGCGCGCATGCGGGC TATATCATCGGCGTGGGCGCGGTGATCCCGCTGGCGGCGATCTTTGGTTTGCTTGCGTTTCTCAACAACCTGATCCCCGT GGCCGCCGCCGCGCCGGTGCTGGTCTTTGTCGCCTTGAGCCTGATCACCAACACCGCCCATTCGGTCAAGACCGAGCATA TGGCGGCCGTGACCATCGCGATGATGCCGCATGTCTCGGCATTTCTGATGGTGAAATGGGCAGCGCTGATCGGCGCGCTG GGTGCCGTGGGCGTCGCGGGTGTGCCGCAGCTGGGCGATGAGGCACTCACCTCTGCGCTGCTGCAGCAGGGAGCTCATTT CAGCGGTCATCTGTCGCTCTCGCAAGGTGCGATCCTGACCGGGCTGATCTGGGGTGCGATTGTCGCCTATGTGATCGATG GCAATTTTCGCGCTGCGGGCGGCTTTGCGCTTGCGGCCGCGGCAATGTCGGCGCTTGGGATCATTCATGGCGCGAGCCTG CATTGGCCAGAGCTGACGAGCGTGTCAGGCGGCTATCTGATCGCTGCCGCGTTCCTCTTTATCTATCCGCTGTTTCACAA GAGCGATGATCTGGTGAACGCCAATGTGGTGTTGGAAGACGCGCCACCGCAAGCCGCCGAATAG
Upstream 100 bases:
>100_bases GGGGGACTGCCCTGCATATCGCAGCGCAGTAGTAGACCGCCGCGCCACTCGGGGAGGGAGGAGAACCGCCCCCAAGGCCG GCCATCAAAGGGAGGTCCCC
Downstream 100 bases:
>100_bases GCTGCACACCCACAGGACCCGTGCGCTGACAAACTGTCCGCGCGCGGGCTTTCGAAACTCAGATCAGCCCAGCACGGCCC GATCTGCCTAGTCTGCCCGG
Product: xanthine/uracil/vitamin C permease
Products: NA
Alternate protein names: Permease; MFS Transporter Xanthine/Uracil Permease; Permease Subfamily Putative; Sulphate Transporter; Regulator; Transcriptional Regulator; Permease Subfamily
Number of amino acids: Translated: 527; Mature: 527
Protein sequence:
>527_residues MRDGSYTYKLFHRSDFSAFWALFTDNLVNLMVLAGICQFVFQMPADIVYGRIVPGAGVAILAGIVAYVALAKRAAQAHGR DVTALPYGISTPVMFVYLFGVIGPIYWATNDPLLAWQVGIGAGFMGGIVAALGAVVGPWLKRVTPRAGMLGTLCGIALVF IGSVPLATVFENPFIGFASMIIILWGLVGRFRLPYNIPAGLLALIVGTLVALMLGTSTLSLEGIGFYPPLPYLGDLIAGV QYLFANPELFLVLVPVQIYNFIETMNNVESAEAAGDHYPVATCQITDGVGTMIGAVFGSPFPTTAYIGHPAYKRMGAHAG YIIGVGAVIPLAAIFGLLAFLNNLIPVAAAAPVLVFVALSLITNTAHSVKTEHMAAVTIAMMPHVSAFLMVKWAALIGAL GAVGVAGVPQLGDEALTSALLQQGAHFSGHLSLSQGAILTGLIWGAIVAYVIDGNFRAAGGFALAAAAMSALGIIHGASL HWPELTSVSGGYLIAAAFLFIYPLFHKSDDLVNANVVLEDAPPQAAE
Sequences:
>Translated_527_residues MRDGSYTYKLFHRSDFSAFWALFTDNLVNLMVLAGICQFVFQMPADIVYGRIVPGAGVAILAGIVAYVALAKRAAQAHGR DVTALPYGISTPVMFVYLFGVIGPIYWATNDPLLAWQVGIGAGFMGGIVAALGAVVGPWLKRVTPRAGMLGTLCGIALVF IGSVPLATVFENPFIGFASMIIILWGLVGRFRLPYNIPAGLLALIVGTLVALMLGTSTLSLEGIGFYPPLPYLGDLIAGV QYLFANPELFLVLVPVQIYNFIETMNNVESAEAAGDHYPVATCQITDGVGTMIGAVFGSPFPTTAYIGHPAYKRMGAHAG YIIGVGAVIPLAAIFGLLAFLNNLIPVAAAAPVLVFVALSLITNTAHSVKTEHMAAVTIAMMPHVSAFLMVKWAALIGAL GAVGVAGVPQLGDEALTSALLQQGAHFSGHLSLSQGAILTGLIWGAIVAYVIDGNFRAAGGFALAAAAMSALGIIHGASL HWPELTSVSGGYLIAAAFLFIYPLFHKSDDLVNANVVLEDAPPQAAE >Mature_527_residues MRDGSYTYKLFHRSDFSAFWALFTDNLVNLMVLAGICQFVFQMPADIVYGRIVPGAGVAILAGIVAYVALAKRAAQAHGR DVTALPYGISTPVMFVYLFGVIGPIYWATNDPLLAWQVGIGAGFMGGIVAALGAVVGPWLKRVTPRAGMLGTLCGIALVF IGSVPLATVFENPFIGFASMIIILWGLVGRFRLPYNIPAGLLALIVGTLVALMLGTSTLSLEGIGFYPPLPYLGDLIAGV QYLFANPELFLVLVPVQIYNFIETMNNVESAEAAGDHYPVATCQITDGVGTMIGAVFGSPFPTTAYIGHPAYKRMGAHAG YIIGVGAVIPLAAIFGLLAFLNNLIPVAAAAPVLVFVALSLITNTAHSVKTEHMAAVTIAMMPHVSAFLMVKWAALIGAL GAVGVAGVPQLGDEALTSALLQQGAHFSGHLSLSQGAILTGLIWGAIVAYVIDGNFRAAGGFALAAAAMSALGIIHGASL HWPELTSVSGGYLIAAAFLFIYPLFHKSDDLVNANVVLEDAPPQAAE
Specific function: Unknown
COG id: COG2252
COG function: function code R; Permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55074; Mature: 55074
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDGSYTYKLFHRSDFSAFWALFTDNLVNLMVLAGICQFVFQMPADIVYGRIVPGAGVAI CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHH LAGIVAYVALAKRAAQAHGRDVTALPYGISTPVMFVYLFGVIGPIYWATNDPLLAWQVGI HHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC GAGFMGGIVAALGAVVGPWLKRVTPRAGMLGTLCGIALVFIGSVPLATVFENPFIGFASM CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHH IIILWGLVGRFRLPYNIPAGLLALIVGTLVALMLGTSTLSLEGIGFYPPLPYLGDLIAGV HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH QYLFANPELFLVLVPVQIYNFIETMNNVESAEAAGDHYPVATCQITDGVGTMIGAVFGSP HHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCC FPTTAYIGHPAYKRMGAHAGYIIGVGAVIPLAAIFGLLAFLNNLIPVAAAAPVLVFVALS CCCCEECCCHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LITNTAHSVKTEHMAAVTIAMMPHVSAFLMVKWAALIGALGAVGVAGVPQLGDEALTSAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH LQQGAHFSGHLSLSQGAILTGLIWGAIVAYVIDGNFRAAGGFALAAAAMSALGIIHGASL HHCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC HWPELTSVSGGYLIAAAFLFIYPLFHKSDDLVNANVVLEDAPPQAAE CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECEEEEECCCCCCCC >Mature Secondary Structure MRDGSYTYKLFHRSDFSAFWALFTDNLVNLMVLAGICQFVFQMPADIVYGRIVPGAGVAI CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHH LAGIVAYVALAKRAAQAHGRDVTALPYGISTPVMFVYLFGVIGPIYWATNDPLLAWQVGI HHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC GAGFMGGIVAALGAVVGPWLKRVTPRAGMLGTLCGIALVFIGSVPLATVFENPFIGFASM CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHH IIILWGLVGRFRLPYNIPAGLLALIVGTLVALMLGTSTLSLEGIGFYPPLPYLGDLIAGV HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH QYLFANPELFLVLVPVQIYNFIETMNNVESAEAAGDHYPVATCQITDGVGTMIGAVFGSP HHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCC FPTTAYIGHPAYKRMGAHAGYIIGVGAVIPLAAIFGLLAFLNNLIPVAAAAPVLVFVALS CCCCEECCCHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LITNTAHSVKTEHMAAVTIAMMPHVSAFLMVKWAALIGALGAVGVAGVPQLGDEALTSAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH LQQGAHFSGHLSLSQGAILTGLIWGAIVAYVIDGNFRAAGGFALAAAAMSALGIIHGASL HHCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC HWPELTSVSGGYLIAAAFLFIYPLFHKSDDLVNANVVLEDAPPQAAE CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA