| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082534
Identifier: 99082534
GI number: 99082534
Start: 2835568
End: 2836560
Strand: Reverse
Name: 99082534
Synonym: TM1040_2694
Alternate gene names: NA
Gene position: 2836560-2835568 (Counterclockwise)
Preceding gene: 99082535
Following gene: 99082533
Centisome position: 88.62
GC content: 61.53
Gene sequence:
>993_bases ATGAAAGACAATCCGATTTCCCCGACGATTCCGCTCGATCAGGATGGTGTCCACCACGGATTTCTGAAACTGCCTTACAG CCGTGACGACAGCGCCTGGGGCTCTGTGATGATCCCGATCACCGTCATTCAGAACGGCGCCGGCAAGACTGCGCTGTTGA CGGGTGCCAATCACGGCGATGAATACGAAGGCCCCGTGGCGTTGCAGGAACTCGCCGCCACCACCCGTGCCGAGGATGTG ACCGGCAGGCTCATTATTGTGCCTTACTTCAACTACCCTGCCTTTCGCGCCAGTGCGCGGACCTCGCCCATCGACCGGGG CAATCTCAACCGCGCCTTTCCGGGCCGTCCCGATGGCACCGTCACGCAAAAGATCGCGGATTACTTTCAGCGTACGCTCC TGCCGATGGCGGATGTGGCGGTGGATTTCCACTCCGGCGGCAAGACGCTGGATTTTGTCCCCTTTGCCGCTGCGCATATC CTCGAGGACAAGGTGCTGCAGGATGCGTGCTTTGCCGCCATGCAGGCCTTCAACGCGCCCTACTCGGTGCAACTCCTCGA GATCGACAGCGAGGGCATGTATGACACCGCCGTCGAGGAAATGGGCAAGGTGCTCGTGACCACCGAACTTGGCGGCGGTG GCATGTCCACCGCGCGCAGCAATGCCATCGCCAAGAAAGGTCTGCGCAACGTGCTGATTCACTTTGGGATCTTGCAGGGC GAGATGCAGATTGACCCGAGTGTGACGCTCGATATGCCCGACGGGGATTGCTACCTCTTCAGCGAGCACGACGGGTTGTT TGAGATCATGATCGATCTTGGCGAACCTGTGCAAGAGGGCGATCTGGTCGCCCGCGTCTGGTCGCCCGACCGCACCGGAG AGGCCCCGGTGGAATACCGCGCCCGCCGCAGCGGCGTGCTCATCAGCCGCCATTTCCCCGGTATGATCAAATCCGGTGAC TGCGCCGCGGTGATCGGCGTGGTCGAGGGCTGA
Upstream 100 bases:
>100_bases CTTTGAATTTGCGCCCGGTCTTCGTATGGGTAGCACAACGCGGCCGGCGCTCGTGACGCCGTGCCCTTTGCGCTCAACAG GCAGGCAGAAGGACAAGGCA
Downstream 100 bases:
>100_bases CATGCATCTCGATCAGCGCGACCTTGATATCCTTCGCATCCTGTCCCGCGATGGCCGCATCACCAAGGCGGCCCTTGCAG ATCAGGTGGGTCTGTCGCCG
Product: succinylglutamate desuccinylase/aspartoacylase
Products: NA
Alternate protein names: Ectoine Utilization Protein EutE; Deacylase; Succinylglutamate Desuccinylase / Aspartoacylase Family; Succinylglutamate Desuccinylase/Aspartoacylase Family; Succinate Dehydrogenase Subunit; Succinylglutamatedesuccinylase/Aspartoacylase; Succinylglutamate Desuccinylase; Serine Protease; Aminoacylase-2/Carboxypeptidase-Z Family Hydrolase; AstE/AspA Family Protein; N-Acetyl Diamonbutyric Acid Acylase; Succinate Dehydrogenase Subunit Sdh
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MKDNPISPTIPLDQDGVHHGFLKLPYSRDDSAWGSVMIPITVIQNGAGKTALLTGANHGDEYEGPVALQELAATTRAEDV TGRLIIVPYFNYPAFRASARTSPIDRGNLNRAFPGRPDGTVTQKIADYFQRTLLPMADVAVDFHSGGKTLDFVPFAAAHI LEDKVLQDACFAAMQAFNAPYSVQLLEIDSEGMYDTAVEEMGKVLVTTELGGGGMSTARSNAIAKKGLRNVLIHFGILQG EMQIDPSVTLDMPDGDCYLFSEHDGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFPGMIKSGD CAAVIGVVEG
Sequences:
>Translated_330_residues MKDNPISPTIPLDQDGVHHGFLKLPYSRDDSAWGSVMIPITVIQNGAGKTALLTGANHGDEYEGPVALQELAATTRAEDV TGRLIIVPYFNYPAFRASARTSPIDRGNLNRAFPGRPDGTVTQKIADYFQRTLLPMADVAVDFHSGGKTLDFVPFAAAHI LEDKVLQDACFAAMQAFNAPYSVQLLEIDSEGMYDTAVEEMGKVLVTTELGGGGMSTARSNAIAKKGLRNVLIHFGILQG EMQIDPSVTLDMPDGDCYLFSEHDGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFPGMIKSGD CAAVIGVVEG >Mature_330_residues MKDNPISPTIPLDQDGVHHGFLKLPYSRDDSAWGSVMIPITVIQNGAGKTALLTGANHGDEYEGPVALQELAATTRAEDV TGRLIIVPYFNYPAFRASARTSPIDRGNLNRAFPGRPDGTVTQKIADYFQRTLLPMADVAVDFHSGGKTLDFVPFAAAHI LEDKVLQDACFAAMQAFNAPYSVQLLEIDSEGMYDTAVEEMGKVLVTTELGGGGMSTARSNAIAKKGLRNVLIHFGILQG EMQIDPSVTLDMPDGDCYLFSEHDGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFPGMIKSGD CAAVIGVVEG
Specific function: Unknown
COG id: COG3608
COG function: function code R; Predicted deacylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35656; Mature: 35656
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDNPISPTIPLDQDGVHHGFLKLPYSRDDSAWGSVMIPITVIQNGAGKTALLTGANHGD CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCC EYEGPVALQELAATTRAEDVTGRLIIVPYFNYPAFRASARTSPIDRGNLNRAFPGRPDGT CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCH VTQKIADYFQRTLLPMADVAVDFHSGGKTLDFVPFAAAHILEDKVLQDACFAAMQAFNAP HHHHHHHHHHHHHCCHHHHEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC YSVQLLEIDSEGMYDTAVEEMGKVLVTTELGGGGMSTARSNAIAKKGLRNVLIHFGILQG CEEEEEEECCCCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEEC EMQIDPSVTLDMPDGDCYLFSEHDGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYR CEEECCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHH ARRSGVLISRHFPGMIKSGDCAAVIGVVEG HHCCCEEEEECCCCCCCCCCCEEEEEEECC >Mature Secondary Structure MKDNPISPTIPLDQDGVHHGFLKLPYSRDDSAWGSVMIPITVIQNGAGKTALLTGANHGD CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCC EYEGPVALQELAATTRAEDVTGRLIIVPYFNYPAFRASARTSPIDRGNLNRAFPGRPDGT CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCH VTQKIADYFQRTLLPMADVAVDFHSGGKTLDFVPFAAAHILEDKVLQDACFAAMQAFNAP HHHHHHHHHHHHHCCHHHHEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC YSVQLLEIDSEGMYDTAVEEMGKVLVTTELGGGGMSTARSNAIAKKGLRNVLIHFGILQG CEEEEEEECCCCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEEC EMQIDPSVTLDMPDGDCYLFSEHDGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYR CEEECCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHH ARRSGVLISRHFPGMIKSGDCAAVIGVVEG HHCCCEEEEECCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA