Click here to switch to the map view.

The map label for this gene is amaB [H]

Identifier: 99082529

GI number: 99082529

Start: 2828383

End: 2829603

Strand: Direct

Name: amaB [H]

Synonym: TM1040_2689

Alternate gene names: 99082529

Gene position: 2828383-2829603 (Clockwise)

Preceding gene: 99082527

Following gene: 99082536

Centisome position: 88.36

GC content: 64.21

Gene sequence:

>1221_bases
ATGGATTGGGGACAGGAAGCCCAGCAACGCCTGGCGAAGATTGCGGCCTGCAGCGCAGCCGGACCCGGTGTAACCCGCCT
GCCCTATACGCCCGAACATTCCGCAGCACTGGAACAGATCAGCGACTGGATGCGGCGCGCCGGGCTCCACCCACAGCTTG
ATGCGGCCGCGACCCTGGTGGGGCGCAGCAGTGCGCCCTCCAACGAAGCCGCCGTTCTGATCGGGTCGCATCAGGACAGC
GTGATCGAAGGCGGGCGCTATGATGGCATCATGGGGATTGTGATCGGCTGTCTGGCGCTTGAACGGCTGGCATCCGAAGG
CACGCGACTCCCCTTTCCGGTCGAGGTACTGGCCTTTGCCGACGAGGAGGGCGTGCGCTTTCCCACCGCTCTTGTTGGCT
CCCGCGCCCTTGCGGGCCGTTTCGACCCCAGCGTTCTGGACATGCGCGACGGCGAGGGCGTGACGCTCCGCACCGCGCTG
TCGGAGTTTGGGGGCAGACCCGATAAAATCGCCTCTGAAGCCCGCAACAAGAACGCGGTGCGCGCTTATCTGGAACTTCA
CATCGAGCAAGGTCCGATGCTGGAGCAGGACAACGCAGCGGTTGGAATCGTCACTGGCATCTGCGGTATCGAGCGCAACA
GCGTTTCATTTGTCGGGGAGACCGGCCATGCGGGCACCGTCCCGATGCAGGGGCGGCGCGATGCGCTGGTGGCCGCGTCC
GAGTTCGTGGTGAAAATCCATGATGCCGCACGAAACATCGATGGGCTGCGCGCCACCATTGGCACGCTGGCGCTGAAACC
GGCAGCCGTGAACGCCATCCCGCGCGAGGCGGCGCTGACGCTTGAGATCCGGGCGCTTTCGGATGCGGCGCGACAGGAAT
TTGCCGGTGCCGCGCAGGTCATCGGCACCGAAATCGCTGCCAAACGGGATGTGAGCTTTGACATGGCAAAAACCTACGAG
CAACTCGCCGTGCCCTGCGCATCGGGGTTGATCGAAACGCTGGAGCTGGCCGCCCGGGATGCCGGACAACACGCACCCCT
GCTGCCCTCGGGGGCGACGCATGATGCCTCAGCGATGGCGGATCTATGCGACATTTCAATGCTGTTCCTGCGCTGTAAAG
ACGGGTTCAGTCACCGCCCGGAGGAATATACCTCTGCCGAGGACATGGCGGCAGCGATTGATGTTACCTGCGCTTTCCTG
CGCCGTCTTGCCGCGGAGTAG

Upstream 100 bases:

>100_bases
TACTCATCACCTGCCGCTCTTTTATCATGATAAAAACATAGACGGGAAAGCGGCAGGGGTATAGACCCCTATTCATCATG
ATAAATTAAGGGGATAGACG

Downstream 100 bases:

>100_bases
GGCGCAGAACCAAACCTCAGGCCGCGGAGCGCGCGCCCAGCGCCCGCAGGTCGCGACGTTTGAGATCAACACGCGCCAGT
GGGCAATAGGCCCGGGCAAC

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: L-carbamoylase [H]

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MDWGQEAQQRLAKIAACSAAGPGVTRLPYTPEHSAALEQISDWMRRAGLHPQLDAAATLVGRSSAPSNEAAVLIGSHQDS
VIEGGRYDGIMGIVIGCLALERLASEGTRLPFPVEVLAFADEEGVRFPTALVGSRALAGRFDPSVLDMRDGEGVTLRTAL
SEFGGRPDKIASEARNKNAVRAYLELHIEQGPMLEQDNAAVGIVTGICGIERNSVSFVGETGHAGTVPMQGRRDALVAAS
EFVVKIHDAARNIDGLRATIGTLALKPAAVNAIPREAALTLEIRALSDAARQEFAGAAQVIGTEIAAKRDVSFDMAKTYE
QLAVPCASGLIETLELAARDAGQHAPLLPSGATHDASAMADLCDISMLFLRCKDGFSHRPEEYTSAEDMAAAIDVTCAFL
RRLAAE

Sequences:

>Translated_406_residues
MDWGQEAQQRLAKIAACSAAGPGVTRLPYTPEHSAALEQISDWMRRAGLHPQLDAAATLVGRSSAPSNEAAVLIGSHQDS
VIEGGRYDGIMGIVIGCLALERLASEGTRLPFPVEVLAFADEEGVRFPTALVGSRALAGRFDPSVLDMRDGEGVTLRTAL
SEFGGRPDKIASEARNKNAVRAYLELHIEQGPMLEQDNAAVGIVTGICGIERNSVSFVGETGHAGTVPMQGRRDALVAAS
EFVVKIHDAARNIDGLRATIGTLALKPAAVNAIPREAALTLEIRALSDAARQEFAGAAQVIGTEIAAKRDVSFDMAKTYE
QLAVPCASGLIETLELAARDAGQHAPLLPSGATHDASAMADLCDISMLFLRCKDGFSHRPEEYTSAEDMAAAIDVTCAFL
RRLAAE
>Mature_406_residues
MDWGQEAQQRLAKIAACSAAGPGVTRLPYTPEHSAALEQISDWMRRAGLHPQLDAAATLVGRSSAPSNEAAVLIGSHQDS
VIEGGRYDGIMGIVIGCLALERLASEGTRLPFPVEVLAFADEEGVRFPTALVGSRALAGRFDPSVLDMRDGEGVTLRTAL
SEFGGRPDKIASEARNKNAVRAYLELHIEQGPMLEQDNAAVGIVTGICGIERNSVSFVGETGHAGTVPMQGRRDALVAAS
EFVVKIHDAARNIDGLRATIGTLALKPAAVNAIPREAALTLEIRALSDAARQEFAGAAQVIGTEIAAKRDVSFDMAKTYE
QLAVPCASGLIETLELAARDAGQHAPLLPSGATHDASAMADLCDISMLFLRCKDGFSHRPEEYTSAEDMAAAIDVTCAFL
RRLAAE

Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=388, Percent_Identity=32.2164948453608, Blast_Score=187, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.87 [H]

Molecular weight: Translated: 42909; Mature: 42909

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWGQEAQQRLAKIAACSAAGPGVTRLPYTPEHSAALEQISDWMRRAGLHPQLDAAATLV
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GRSSAPSNEAAVLIGSHQDSVIEGGRYDGIMGIVIGCLALERLASEGTRLPFPVEVLAFA
CCCCCCCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
DEEGVRFPTALVGSRALAGRFDPSVLDMRDGEGVTLRTALSEFGGRPDKIASEARNKNAV
CCCCCCCCHHHHCCHHHCCCCCCCEEECCCCCCEEHHHHHHHHCCCCHHHHHHHCCHHHH
RAYLELHIEQGPMLEQDNAAVGIVTGICGIERNSVSFVGETGHAGTVPMQGRRDALVAAS
EEEHHEEECCCCCCCCCCCEEEEEHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHH
EFVVKIHDAARNIDGLRATIGTLALKPAAVNAIPREAALTLEIRALSDAARQEFAGAAQV
HHHEEEHHHHCCCCHHHHHHHHHHCCCHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHH
IGTEIAAKRDVSFDMAKTYEQLAVPCASGLIETLELAARDAGQHAPLLPSGATHDASAMA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
DLCDISMLFLRCKDGFSHRPEEYTSAEDMAAAIDVTCAFLRRLAAE
HHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDWGQEAQQRLAKIAACSAAGPGVTRLPYTPEHSAALEQISDWMRRAGLHPQLDAAATLV
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GRSSAPSNEAAVLIGSHQDSVIEGGRYDGIMGIVIGCLALERLASEGTRLPFPVEVLAFA
CCCCCCCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
DEEGVRFPTALVGSRALAGRFDPSVLDMRDGEGVTLRTALSEFGGRPDKIASEARNKNAV
CCCCCCCCHHHHCCHHHCCCCCCCEEECCCCCCEEHHHHHHHHCCCCHHHHHHHCCHHHH
RAYLELHIEQGPMLEQDNAAVGIVTGICGIERNSVSFVGETGHAGTVPMQGRRDALVAAS
EEEHHEEECCCCCCCCCCCEEEEEHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHH
EFVVKIHDAARNIDGLRATIGTLALKPAAVNAIPREAALTLEIRALSDAARQEFAGAAQV
HHHEEEHHHHCCCCHHHHHHHHHHCCCHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHH
IGTEIAAKRDVSFDMAKTYEQLAVPCASGLIETLELAARDAGQHAPLLPSGATHDASAMA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
DLCDISMLFLRCKDGFSHRPEEYTSAEDMAAAIDVTCAFLRRLAAE
HHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023955; 8285691 [H]