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The map label for this gene is yliC [C]

Identifier: 99082525

GI number: 99082525

Start: 2824082

End: 2825029

Strand: Reverse

Name: yliC [C]

Synonym: TM1040_2685

Alternate gene names: 99082525

Gene position: 2825029-2824082 (Counterclockwise)

Preceding gene: 99082526

Following gene: 99082524

Centisome position: 88.26

GC content: 59.28

Gene sequence:

>948_bases
ATGACTGGCTATATTTTGAAACGGCTTATTTCGGCGGTGCCGGTCCTCTTGGGGATCTCGGTCATCGTGTTTCTGATCAT
GGCGATGATCCCGGGCGACCCGGCCACGGCGATCCTTGGGTCCTATGCGACGCCCGAGAATGTGGAGAAGCTCAATCGCG
ATCTCGGTCTCGATAAGCCCCTGGTGCAGCGGTACTTTATCTGGCTCGGCAATATGTTGCAGGGCGATTTTGGCCGCAGT
TTCTCGCTCAATCGTGCGGTGCTCGACGAGGTGCTGGAGCGGTTCAATGCAACGCTGGTGCTGGCGGGCACATCCTTTGT
GATCTGTTCGATCCTTGGCGTTGCGGCAGGTGTGGTCTCGGCGGCGCGCCAGTACGGGCTGGCGGATAAGGCGATCACCT
TTGCAGTGCTTCTGGGCATTTCGATTCCGTCGTTTTTCCTCGGCATGATGATGATCCTGATCTTTGCGGTGAATCTGCGC
TGGTTTCCGGTGTCCGGCATGTGGCCGATCTACGGCGCGCGGGATCTCTCGGCCCTTGTCAGTCATTTGACACTTCCCGC
CATTGCGCTGGCGGTGGTGGCCACTGGCGTCATCGCGCGCTTGTCTCGGTCCGCCATGCTGGAGGTCCTACGACAGGATT
TCATCCGCACAGCGCGCGCCAAAGGCGTGCATGAACGCAGCGTGATCTGGCGCCATGGTCTGCGTGCGGCGATGGTGTCG
ATCATCCCGGTGCTGGGCATTCAAGCCGGGTTTGTGCTCTCGGGCGCGGTCTATATCGAGATGGTGTTTCAATGGCCCGG
CGTCGGGCGGATGCTGGTCGATGCCATCCTAAAACGTGACATTCTGTTGGTGCAGGGCGGTGTGGTCTTTGTGGCTGCTT
GCTATGTGCTGTTCAACATCGCCGTCGATGTCGCCCAAAGCCTTCTGGACCCGAGGATCAAGGCATGA

Upstream 100 bases:

>100_bases
GGCTTTGCCCGATCCGACCCGCGCGCGCCCCGGCGGGGCGCGCGCTCCCGTTTGACTGAAACCCCACTCCACCCATGTCG
GTAGAGCAGGAAGGCGCGCC

Downstream 100 bases:

>100_bases
GCTTCCTGCGTCTTTTGTCCCGCAACCGCCTCGCGCTGGCGGGGCTCATCGTGATGTCGGTGGTGCTGCTGCTGGCGGTG
CTGACACCCATTTTGCCGCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MTGYILKRLISAVPVLLGISVIVFLIMAMIPGDPATAILGSYATPENVEKLNRDLGLDKPLVQRYFIWLGNMLQGDFGRS
FSLNRAVLDEVLERFNATLVLAGTSFVICSILGVAAGVVSAARQYGLADKAITFAVLLGISIPSFFLGMMMILIFAVNLR
WFPVSGMWPIYGARDLSALVSHLTLPAIALAVVATGVIARLSRSAMLEVLRQDFIRTARAKGVHERSVIWRHGLRAAMVS
IIPVLGIQAGFVLSGAVYIEMVFQWPGVGRMLVDAILKRDILLVQGGVVFVAACYVLFNIAVDVAQSLLDPRIKA

Sequences:

>Translated_315_residues
MTGYILKRLISAVPVLLGISVIVFLIMAMIPGDPATAILGSYATPENVEKLNRDLGLDKPLVQRYFIWLGNMLQGDFGRS
FSLNRAVLDEVLERFNATLVLAGTSFVICSILGVAAGVVSAARQYGLADKAITFAVLLGISIPSFFLGMMMILIFAVNLR
WFPVSGMWPIYGARDLSALVSHLTLPAIALAVVATGVIARLSRSAMLEVLRQDFIRTARAKGVHERSVIWRHGLRAAMVS
IIPVLGIQAGFVLSGAVYIEMVFQWPGVGRMLVDAILKRDILLVQGGVVFVAACYVLFNIAVDVAQSLLDPRIKA
>Mature_314_residues
TGYILKRLISAVPVLLGISVIVFLIMAMIPGDPATAILGSYATPENVEKLNRDLGLDKPLVQRYFIWLGNMLQGDFGRSF
SLNRAVLDEVLERFNATLVLAGTSFVICSILGVAAGVVSAARQYGLADKAITFAVLLGISIPSFFLGMMMILIFAVNLRW
FPVSGMWPIYGARDLSALVSHLTLPAIALAVVATGVIARLSRSAMLEVLRQDFIRTARAKGVHERSVIWRHGLRAAMVSI
IPVLGIQAGFVLSGAVYIEMVFQWPGVGRMLVDAILKRDILLVQGGVVFVAACYVLFNIAVDVAQSLLDPRIKA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=314, Percent_Identity=39.171974522293, Blast_Score=242, Evalue=2e-65,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=37.2781065088757, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1789888, Length=317, Percent_Identity=36.5930599369085, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=33.968253968254, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=37.4233128834356, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=29.7794117647059, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=25.5494505494505, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34129; Mature: 33998

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGYILKRLISAVPVLLGISVIVFLIMAMIPGDPATAILGSYATPENVEKLNRDLGLDKP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHCCCCHH
LVQRYFIWLGNMLQGDFGRSFSLNRAVLDEVLERFNATLVLAGTSFVICSILGVAAGVVS
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHH
AARQYGLADKAITFAVLLGISIPSFFLGMMMILIFAVNLRWFPVSGMWPIYGARDLSALV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHH
SHLTLPAIALAVVATGVIARLSRSAMLEVLRQDFIRTARAKGVHERSVIWRHGLRAAMVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IIPVLGIQAGFVLSGAVYIEMVFQWPGVGRMLVDAILKRDILLVQGGVVFVAACYVLFNI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AVDVAQSLLDPRIKA
HHHHHHHHHCCCCCC
>Mature Secondary Structure 
TGYILKRLISAVPVLLGISVIVFLIMAMIPGDPATAILGSYATPENVEKLNRDLGLDKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHCCCCHH
LVQRYFIWLGNMLQGDFGRSFSLNRAVLDEVLERFNATLVLAGTSFVICSILGVAAGVVS
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHH
AARQYGLADKAITFAVLLGISIPSFFLGMMMILIFAVNLRWFPVSGMWPIYGARDLSALV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHH
SHLTLPAIALAVVATGVIARLSRSAMLEVLRQDFIRTARAKGVHERSVIWRHGLRAAMVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IIPVLGIQAGFVLSGAVYIEMVFQWPGVGRMLVDAILKRDILLVQGGVVFVAACYVLFNI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AVDVAQSLLDPRIKA
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]