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The map label for this gene is yhcM [H]

Identifier: 99082513

GI number: 99082513

Start: 2808684

End: 2809748

Strand: Direct

Name: yhcM [H]

Synonym: TM1040_2673

Alternate gene names: 99082513

Gene position: 2808684-2809748 (Clockwise)

Preceding gene: 99082511

Following gene: 99082514

Centisome position: 87.75

GC content: 61.78

Gene sequence:

>1065_bases
ATGACCGACCTCTATCAGGCCCGCGTCGACGCCGGGCAGATCCAGCCGGATCCCGCGCAGCAAGCGGTGTTGCCGGAGTT
TGACAGGATTGCCGATGGCCTGCGCGCAGAGCCTGTAAAACGGGGCCTGTTTCGCAAGGCCGTGCGCCCGGAGGTCAAGG
GGCTCTATCTCTGGGGCGGTGTCGGGCGCGGCAAGTCGATGCTGATGGATCTCTTTGTCGAGAGCCTTGATGACATCCCG
AGCCGGAGGGTGCATTTTCACGCCTTCATGCAGGAGATCCACGCAAAGATGCATCTCGCGCGTGAAGCGGGCACCGAGGA
CGCTTTGGCACCGGTGGTGGCGGATGTGGTGGCCTCGGTGCGGCTGTTGGCCTTTGACGAGATGCAAATCACCGATATCA
CCGATGCGATGATCGTCGGCCGCCTGTTTGAGGCGCTCTTTGAGGCGGGTGTGGTGGTGGTGACCACATCGAACCGGGTG
CCGGACGATCTTTATAAAAACGGGCTAAATCGGCAGCTGTTCTTACCCTTTATCGACCTCATCAAAGACAAGATGCAGGT
GCATGAGATGGTCAGCCCCAAAGACTACCGACAGGACCGTCTGACCGGGTCGCGGGTCTATTTCACCCCCCTCAACGCCG
AGGTGCGCGCCGAGATGGACGCGATCTGGCGCGATCTTACCGGCGGTGCGGCAGAGCCTCTGGTGCTGATGGTGAAGGGA
CGCGAAGTCACCCTGCCTGCCTATCGCAACGGGGTAGGACGGGCGACCTTTTATGATCTCTGCGGCACCATGCTGGGGCC
GGGCGATTATCTGGCGGTGGCCGATGCGGTCAAGGTGCTGGTGCTCGAGAACATCCCCGCGCTGGGGCGCAACAACTTCA
ACGAGGCCAAGCGCTTTGTGACATTGATCGACGCCCTCTATGAGGCACGCGTGCGATTGATCTGTTCGGCCGCGGCAGAG
CCGGAGTTCCTCTATATGGAGGGCGACGGGGCCTTTGAATTCGAGCGCACCGCCTCGCGCCTGCGGGAGATGCAGGACAA
GGACTGGGGTCAGCCCAAGGCCTGA

Upstream 100 bases:

>100_bases
AGGCGATGCATTAGGAAAATTGAACAATCGGGTTCAGCCAAGGGTCATGCCGCGCTTTCCTTTGCAAAATCATCCGGCTA
TGGCTGGGGGCATGACACAT

Downstream 100 bases:

>100_bases
GCCATGCTCATCTGAGAGGTATTGTAACCTCAAATGAGCACAAACAGAGCCTAATCAAAGAGTTTTCTTGCATCATGCGC
GGCGCCCCCTACAAAGGTAA

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MTDLYQARVDAGQIQPDPAQQAVLPEFDRIADGLRAEPVKRGLFRKAVRPEVKGLYLWGGVGRGKSMLMDLFVESLDDIP
SRRVHFHAFMQEIHAKMHLAREAGTEDALAPVVADVVASVRLLAFDEMQITDITDAMIVGRLFEALFEAGVVVVTTSNRV
PDDLYKNGLNRQLFLPFIDLIKDKMQVHEMVSPKDYRQDRLTGSRVYFTPLNAEVRAEMDAIWRDLTGGAAEPLVLMVKG
REVTLPAYRNGVGRATFYDLCGTMLGPGDYLAVADAVKVLVLENIPALGRNNFNEAKRFVTLIDALYEARVRLICSAAAE
PEFLYMEGDGAFEFERTASRLREMQDKDWGQPKA

Sequences:

>Translated_354_residues
MTDLYQARVDAGQIQPDPAQQAVLPEFDRIADGLRAEPVKRGLFRKAVRPEVKGLYLWGGVGRGKSMLMDLFVESLDDIP
SRRVHFHAFMQEIHAKMHLAREAGTEDALAPVVADVVASVRLLAFDEMQITDITDAMIVGRLFEALFEAGVVVVTTSNRV
PDDLYKNGLNRQLFLPFIDLIKDKMQVHEMVSPKDYRQDRLTGSRVYFTPLNAEVRAEMDAIWRDLTGGAAEPLVLMVKG
REVTLPAYRNGVGRATFYDLCGTMLGPGDYLAVADAVKVLVLENIPALGRNNFNEAKRFVTLIDALYEARVRLICSAAAE
PEFLYMEGDGAFEFERTASRLREMQDKDWGQPKA
>Mature_353_residues
TDLYQARVDAGQIQPDPAQQAVLPEFDRIADGLRAEPVKRGLFRKAVRPEVKGLYLWGGVGRGKSMLMDLFVESLDDIPS
RRVHFHAFMQEIHAKMHLAREAGTEDALAPVVADVVASVRLLAFDEMQITDITDAMIVGRLFEALFEAGVVVVTTSNRVP
DDLYKNGLNRQLFLPFIDLIKDKMQVHEMVSPKDYRQDRLTGSRVYFTPLNAEVRAEMDAIWRDLTGGAAEPLVLMVKGR
EVTLPAYRNGVGRATFYDLCGTMLGPGDYLAVADAVKVLVLENIPALGRNNFNEAKRFVTLIDALYEARVRLICSAAAEP
EFLYMEGDGAFEFERTASRLREMQDKDWGQPKA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=398, Percent_Identity=34.6733668341709, Blast_Score=230, Evalue=2e-60,
Organism=Escherichia coli, GI1789627, Length=364, Percent_Identity=36.5384615384615, Blast_Score=218, Evalue=3e-58,
Organism=Caenorhabditis elegans, GI17505769, Length=413, Percent_Identity=31.7191283292978, Blast_Score=215, Evalue=3e-56,
Organism=Saccharomyces cerevisiae, GI6320783, Length=315, Percent_Identity=33.968253968254, Blast_Score=177, Evalue=2e-45,
Organism=Drosophila melanogaster, GI20129913, Length=419, Percent_Identity=32.4582338902148, Blast_Score=194, Evalue=5e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 39627; Mature: 39496

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLYQARVDAGQIQPDPAQQAVLPEFDRIADGLRAEPVKRGLFRKAVRPEVKGLYLWGG
CCCHHHHHCCCCCCCCCCCHHHCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECC
VGRGKSMLMDLFVESLDDIPSRRVHFHAFMQEIHAKMHLAREAGTEDALAPVVADVVASV
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RLLAFDEMQITDITDAMIVGRLFEALFEAGVVVVTTSNRVPDDLYKNGLNRQLFLPFIDL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHCCCCCEEHHHHHHH
IKDKMQVHEMVSPKDYRQDRLTGSRVYFTPLNAEVRAEMDAIWRDLTGGAAEPLVLMVKG
HHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEC
REVTLPAYRNGVGRATFYDLCGTMLGPGDYLAVADAVKVLVLENIPALGRNNFNEAKRFV
CEEECHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
TLIDALYEARVRLICSAAAEPEFLYMEGDGAFEFERTASRLREMQDKDWGQPKA
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TDLYQARVDAGQIQPDPAQQAVLPEFDRIADGLRAEPVKRGLFRKAVRPEVKGLYLWGG
CCHHHHHCCCCCCCCCCCHHHCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECC
VGRGKSMLMDLFVESLDDIPSRRVHFHAFMQEIHAKMHLAREAGTEDALAPVVADVVASV
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RLLAFDEMQITDITDAMIVGRLFEALFEAGVVVVTTSNRVPDDLYKNGLNRQLFLPFIDL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHCCCCCEEHHHHHHH
IKDKMQVHEMVSPKDYRQDRLTGSRVYFTPLNAEVRAEMDAIWRDLTGGAAEPLVLMVKG
HHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEC
REVTLPAYRNGVGRATFYDLCGTMLGPGDYLAVADAVKVLVLENIPALGRNNFNEAKRFV
CEEECHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
TLIDALYEARVRLICSAAAEPEFLYMEGDGAFEFERTASRLREMQDKDWGQPKA
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]