| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082507
Identifier: 99082507
GI number: 99082507
Start: 2802298
End: 2803320
Strand: Direct
Name: 99082507
Synonym: TM1040_2667
Alternate gene names: NA
Gene position: 2802298-2803320 (Clockwise)
Preceding gene: 99082506
Following gene: 99082508
Centisome position: 87.55
GC content: 68.62
Gene sequence:
>1023_bases ATGAAACCCGGTCCCCGCAATCTCATCACCGATGTCACCGGCCTGCGTGTTGGCAATGCCGCGGACGCGCGGTTGAAATC AGGCACCACGGTCCTGACCGCGGATCAGCCGTTCACGGCAGCGGTGCATGTGATGGGGGGCGCCCCCGGCACGCGAGAGA CCGATTTGCTCGCGCCCGACAAAACCGTGCCCGCCGTTGACGCGCTCGTGCTCTCTGGCGGCTCGGCCTATGGGCTGGAT GCCTGCTCGGGCGTGGTGGACGGGCTGCGCGCCATGGGGCGCGGGTTTCGTCTTGGTCCCGCCATTGTGCCCATCTGCCC CGGCGCGATCATCTTTGATCTGTTGAACGGCGGCGACAAGGACTGGCGGGACAATCCCTATCCCGCGCTTGGGCGCGCCG CGCTCAGGGACGCCAGTGCGGAGTTTGCCCTCGGCACGGTGGGCGCGGGCACCGGCGCGCTCACGGGTATGCAAAAGGGC GGGCTGGGGTCGGCCTCGCTGGTGCTCGAAAATGGCCTCACCGTGGGGGCGCTGGTGGTGGTGAACCCGATTGGATCGGT GACCACCCCGGGCGAGCGCCACTTCTGGGCGGCCCCGTTTGAAATCGACGGAGAATTCGGCGGGCTTGGGCCTGACCCCA GCGCCGGGATCGGGCGCAGCCTGCGCAGCCGCAAGATGGAGGCCATGGCAGAGCTGGCAGGCGCAGCCGTCTCCTCGGAG GGGTCCAACACCACGATTGCGATTGTGGCCACGGATGCGGCGCTGACCAAAGCCGAAGCCACCCGCATGGCGACCACCGC CCATGACGGCATGGCGCGGGCCATCCTGCCGAGCCATGGGCCACATGATGGCGATCTGGTCTTTGCAGCCGCCACCGGCG CGCAGTCCATGACCGACCCCGCAGCGGATATGTTGGCGCTGTGCCATGCCGGATCGCTCTGCCTCGCGCGTGCGATCGCC CGCGCGGTCCATGCCGCCACCCCGGCCGAGGGTGATATTCTGCCCTGCTGGTCAGACTCCTGA
Upstream 100 bases:
>100_bases ACAAAGTTGCGCCAGAACGCCAAACGGCGCGGCAGCGCTAAGACTGTGCGCCCGGAACGGGCGCTCCGCTTGAGACCCAG AACTGACGACAGGACAGCCC
Downstream 100 bases:
>100_bases AGGAGAGGCTGGATACGCGCAACGGACAGGTCTTTGCACCGGGCTGCCCTCTGGCATCCGGTGGGAGGAGTTTGTCTGGT CCGGTGGCGCGCTCTGTCCA
Product: peptidase S58, DmpA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MKPGPRNLITDVTGLRVGNAADARLKSGTTVLTADQPFTAAVHVMGGAPGTRETDLLAPDKTVPAVDALVLSGGSAYGLD ACSGVVDGLRAMGRGFRLGPAIVPICPGAIIFDLLNGGDKDWRDNPYPALGRAALRDASAEFALGTVGAGTGALTGMQKG GLGSASLVLENGLTVGALVVVNPIGSVTTPGERHFWAAPFEIDGEFGGLGPDPSAGIGRSLRSRKMEAMAELAGAAVSSE GSNTTIAIVATDAALTKAEATRMATTAHDGMARAILPSHGPHDGDLVFAAATGAQSMTDPAADMLALCHAGSLCLARAIA RAVHAATPAEGDILPCWSDS
Sequences:
>Translated_340_residues MKPGPRNLITDVTGLRVGNAADARLKSGTTVLTADQPFTAAVHVMGGAPGTRETDLLAPDKTVPAVDALVLSGGSAYGLD ACSGVVDGLRAMGRGFRLGPAIVPICPGAIIFDLLNGGDKDWRDNPYPALGRAALRDASAEFALGTVGAGTGALTGMQKG GLGSASLVLENGLTVGALVVVNPIGSVTTPGERHFWAAPFEIDGEFGGLGPDPSAGIGRSLRSRKMEAMAELAGAAVSSE GSNTTIAIVATDAALTKAEATRMATTAHDGMARAILPSHGPHDGDLVFAAATGAQSMTDPAADMLALCHAGSLCLARAIA RAVHAATPAEGDILPCWSDS >Mature_340_residues MKPGPRNLITDVTGLRVGNAADARLKSGTTVLTADQPFTAAVHVMGGAPGTRETDLLAPDKTVPAVDALVLSGGSAYGLD ACSGVVDGLRAMGRGFRLGPAIVPICPGAIIFDLLNGGDKDWRDNPYPALGRAALRDASAEFALGTVGAGTGALTGMQKG GLGSASLVLENGLTVGALVVVNPIGSVTTPGERHFWAAPFEIDGEFGGLGPDPSAGIGRSLRSRKMEAMAELAGAAVSSE GSNTTIAIVATDAALTKAEATRMATTAHDGMARAILPSHGPHDGDLVFAAATGAQSMTDPAADMLALCHAGSLCLARAIA RAVHAATPAEGDILPCWSDS
Specific function: Unknown
COG id: COG3191
COG function: function code EQ; L-aminopeptidase/D-esterase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.leprae ML1167 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016117 - InterPro: IPR005321 [H]
Pfam domain/function: PF03576 Peptidase_S58 [H]
EC number: NA
Molecular weight: Translated: 34125; Mature: 34125
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPGPRNLITDVTGLRVGNAADARLKSGTTVLTADQPFTAAVHVMGGAPGTRETDLLAPD CCCCCCCHHHHHHCEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCC KTVPAVDALVLSGGSAYGLDACSGVVDGLRAMGRGFRLGPAIVPICPGAIIFDLLNGGDK CCCCHHHHHEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCC DWRDNPYPALGRAALRDASAEFALGTVGAGTGALTGMQKGGLGSASLVLENGLTVGALVV CCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCCEEEEEECCCCEEEEEE VNPIGSVTTPGERHFWAAPFEIDGEFGGLGPDPSAGIGRSLRSRKMEAMAELAGAAVSSE EECCCCCCCCCCCCEEECCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC GSNTTIAIVATDAALTKAEATRMATTAHDGMARAILPSHGPHDGDLVFAAATGAQSMTDP CCCCEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCH AADMLALCHAGSLCLARAIARAVHAATPAEGDILPCWSDS HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC >Mature Secondary Structure MKPGPRNLITDVTGLRVGNAADARLKSGTTVLTADQPFTAAVHVMGGAPGTRETDLLAPD CCCCCCCHHHHHHCEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCC KTVPAVDALVLSGGSAYGLDACSGVVDGLRAMGRGFRLGPAIVPICPGAIIFDLLNGGDK CCCCHHHHHEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCC DWRDNPYPALGRAALRDASAEFALGTVGAGTGALTGMQKGGLGSASLVLENGLTVGALVV CCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCCEEEEEECCCCEEEEEE VNPIGSVTTPGERHFWAAPFEIDGEFGGLGPDPSAGIGRSLRSRKMEAMAELAGAAVSSE EECCCCCCCCCCCCEEECCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC GSNTTIAIVATDAALTKAEATRMATTAHDGMARAILPSHGPHDGDLVFAAATGAQSMTDP CCCCEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCH AADMLALCHAGSLCLARAIARAVHAATPAEGDILPCWSDS HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]