| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082496
Identifier: 99082496
GI number: 99082496
Start: 2791376
End: 2792497
Strand: Reverse
Name: 99082496
Synonym: TM1040_2656
Alternate gene names: NA
Gene position: 2792497-2791376 (Counterclockwise)
Preceding gene: 99082497
Following gene: 99082495
Centisome position: 87.24
GC content: 61.23
Gene sequence:
>1122_bases ATGCAATGGAACATCTGTGTTGTGGGCGCGGGCAAGATCGGCCAGGCGATTGCCACGTTTTTAAAGACATCTGCCAACTA TCAGGTGACCCTCGCGGATCATGACCTGAATGCGCTGGGCGCGGTGGCGGAGCTGGGGGTGCCGACCCGGCAGATCGACG CCAAGGATCCGGTGTCGCTGGCAAAGGGGCTTCAGGGGTTTGACGCGGTGATTTCTGCCGCGCCGTTCTTTTTGACGCCA ATGATAGCGGAGGCCGCAAAAACCGCCGGCGCGCATTATTTCGACCTCACCGAGGATGTGGCCGCCACCGAAGCGGTGCG CAAACTGGCCGAAGGCAGCGAGACGGTGTTCATGCCCCAGAGCGGCCTTGCGCCCGGTTTCGTGGGCATCGCGGGCGCGT CACTGGCGGCAGAATTCGATGAGCTGGACAGCCTGCACATGCGGGTCGGCGCGCTGCCGAAGTTTCCGACCAACGCGTTG AAATATAATCTCACCTGGTCCACCGACGGGCTGATCAACGAGTATTGCAACCCCTGCGATGCCATCGTGAATGGCGCGCG CACCAAGACAGCGCCGCTCGAAGATTACGAGCGTCTGAGCCTTGATGGGGTTGAGTATGAATGCTTCAACACCTCGGGTG GGCTTGGCACCTTGCCAGAGACGCTGGACGGGAAGGCGCGGGCGGTCTCGTATCGGTCGATCCGCTATCCCGGTCACTGC GACATCCTGAAAATGCTGCTGCATGATCTGGGGCTGGAACGCCGCCGCGACCTGATGAAAGAGATTTTCGAGAGCGCATT GCCGCGCACCGATCAGGACGTGGTGCTGGTCTATTGCACCGCGCGGGGCCGCATCAATGGCGAGCTGCGTGAAAAGAGCC TCATCAACAAGAGCTATGCCCGCCAGATCGGCGGCAAGACCTGGAGCGCGATCCAAGTCACCACCACCGCCGGGGTGCTG GGGGTTGTGGATCTGGTGCGGCAAGGCGTCCTGCCCGCGCGCGGCTTTGTAAGCCAGGAACAGGTGAAGCTGCAGGACTT CCTCGAGACAGAATTTGGCCAGCTCTACCGGGCGGGCGACATCGACCACATGACAGACACAACAAAATTGGCAGCTGAGT GA
Upstream 100 bases:
>100_bases CCGTCATAGTGGCGTGATTTTACGTCACTCCGACAATTCCGGCCCTACAAATCGAACAATTGAACCTGCACGCTGCTCTC AAACAGGAGGTGCAGGTCAC
Downstream 100 bases:
>100_bases TGAAAGACATGGCACGAACAGCAGACGATATCCTGAAGAACCTGGGCCTGACGGCGGCAGAGCTGAGCGGTGGCAGCCGC GCGGTGCGCTCGCCCATTGA
Product: saccharopine dehydrogenase
Products: NA
Alternate protein names: Dehydrogenase; L-Lysine Dehydrogenase; Saccharopine Reductase; Saccharopine Dehydrogenase Family Protein; Dehydrogenase Protein; Saccharopine Dehydrogenase Protein; Saccharopine Dehydrogenase And Related Protein; TrkA-NSaccharopine Dehydrogenase; Oxidoreductase; Saccharopine Dehydrogenase Conjectural; Saccharopine Dehydrogenase-Like Protein; Saccharopine Dehydrogenase/Saccharopine Reductase
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSLAKGLQGFDAVISAAPFFLTP MIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQSGLAPGFVGIAGASLAAEFDELDSLHMRVGALPKFPTNAL KYNLTWSTDGLINEYCNPCDAIVNGARTKTAPLEDYERLSLDGVEYECFNTSGGLGTLPETLDGKARAVSYRSIRYPGHC DILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCTARGRINGELREKSLINKSYARQIGGKTWSAIQVTTTAGVL GVVDLVRQGVLPARGFVSQEQVKLQDFLETEFGQLYRAGDIDHMTDTTKLAAE
Sequences:
>Translated_373_residues MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSLAKGLQGFDAVISAAPFFLTP MIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQSGLAPGFVGIAGASLAAEFDELDSLHMRVGALPKFPTNAL KYNLTWSTDGLINEYCNPCDAIVNGARTKTAPLEDYERLSLDGVEYECFNTSGGLGTLPETLDGKARAVSYRSIRYPGHC DILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCTARGRINGELREKSLINKSYARQIGGKTWSAIQVTTTAGVL GVVDLVRQGVLPARGFVSQEQVKLQDFLETEFGQLYRAGDIDHMTDTTKLAAE >Mature_373_residues MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSLAKGLQGFDAVISAAPFFLTP MIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQSGLAPGFVGIAGASLAAEFDELDSLHMRVGALPKFPTNAL KYNLTWSTDGLINEYCNPCDAIVNGARTKTAPLEDYERLSLDGVEYECFNTSGGLGTLPETLDGKARAVSYRSIRYPGHC DILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCTARGRINGELREKSLINKSYARQIGGKTWSAIQVTTTAGVL GVVDLVRQGVLPARGFVSQEQVKLQDFLETEFGQLYRAGDIDHMTDTTKLAAE
Specific function: Unknown
COG id: COG1748
COG function: function code E; Saccharopine dehydrogenase and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40369; Mature: 40369
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSL CCEEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHH AKGLQGFDAVISAAPFFLTPMIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQ HHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCCEEEECC SGLAPGFVGIAGASLAAEFDELDSLHMRVGALPKFPTNALKYNLTWSTDGLINEYCNPCD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHCCHHH AIVNGARTKTAPLEDYERLSLDGVEYECFNTSGGLGTLPETLDGKARAVSYRSIRYPGHC HHHCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCHHEEEEEEECCCCCH DILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCTARGRINGELREKSLINKSYA HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH RQIGGKTWSAIQVTTTAGVLGVVDLVRQGVLPARGFVSQEQVKLQDFLETEFGQLYRAGD HHHCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC IDHMTDTTKLAAE CCHHCCCHHHCCC >Mature Secondary Structure MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSL CCEEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHH AKGLQGFDAVISAAPFFLTPMIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQ HHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCCEEEECC SGLAPGFVGIAGASLAAEFDELDSLHMRVGALPKFPTNALKYNLTWSTDGLINEYCNPCD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHCCHHH AIVNGARTKTAPLEDYERLSLDGVEYECFNTSGGLGTLPETLDGKARAVSYRSIRYPGHC HHHCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCHHEEEEEEECCCCCH DILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCTARGRINGELREKSLINKSYA HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH RQIGGKTWSAIQVTTTAGVLGVVDLVRQGVLPARGFVSQEQVKLQDFLETEFGQLYRAGD HHHCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC IDHMTDTTKLAAE CCHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA