Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is bluB [H]

Identifier: 99082448

GI number: 99082448

Start: 2743548

End: 2744201

Strand: Direct

Name: bluB [H]

Synonym: TM1040_2608

Alternate gene names: 99082448

Gene position: 2743548-2744201 (Clockwise)

Preceding gene: 99082447

Following gene: 99082449

Centisome position: 85.71

GC content: 66.21

Gene sequence:

>654_bases
ATGACGGGCCCGGTGCAGGAGGCAAAGGGATGTTTCCCGCAGGCGTTCCGCGCCGAGCTCGATCTGTTGATGAAATTGCG
CCGGGACGTCCGGCGCTTTCGCACCGATCCGGTGGACGAGGCAGTGCTGACGCGCTGCCTCTCTGCCATTTCGCTGGCGC
CTTCCGTGGGTCTCAGCGAGCCTTGGCGCATCATCCGCGTCGAAAGCGAGACCGCCCGCGCGGCGGCTCTACAGAATTTC
GAGACCGCCAATGCCGAGGCGCTGGCGGACTACAGCGAGGATCGCGCTGCCACCTATGCGCGCCTCAAACTCTCCGGCAT
GCGCGAAGCCCCGGTCCAGATCGCCTTCTTTTGCGATGACGAGACCGGCAAGGGGCACGGCCTTGGCGCGCGCAGCATGC
CGGAAATGCGCCGCTATTCGGTGGTGACGGCGGTCACGCTCTTCTGGCTCGCGCTGCGCGCCGAAGGGCTGGGGCTCGGC
TGGGTTTCGGTGCTTGATCCCGCCCGAATGGCGCGCGATCTGGATGTGCCTCAAAGCTGGAGCCTCATCGGGTATTTCTG
CATCGGCCACCCGGAGCGCCTGTCGGACACGCCGGAACTGGAGCAGGAAGGCTGGGAACAGCGCTTTGCCGCACTCCCGA
TCGAGACCCGCTGA

Upstream 100 bases:

>100_bases
CCCAACAAAGCGAAGCCGGGCAAGAAAGCTCAGGAGCGCGCTGAAGAGAAAGCCGCCAAGGCAGCAGAAGCCGCCGAAGC
AGCAGACGCGGAATAATCAC

Downstream 100 bases:

>100_bases
GGCGGTGGTGCAGACGTGGGACTGACATCGGGGCGAACATGGGGCTGATCCGCATGGTGATCTTCACCCTTGTCGCCTTT
GGCGCCGGGGTTCTTTATGA

Product: Cob(II)yrinic acid a,c-diamide reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTGPVQEAKGCFPQAFRAELDLLMKLRRDVRRFRTDPVDEAVLTRCLSAISLAPSVGLSEPWRIIRVESETARAAALQNF
ETANAEALADYSEDRAATYARLKLSGMREAPVQIAFFCDDETGKGHGLGARSMPEMRRYSVVTAVTLFWLALRAEGLGLG
WVSVLDPARMARDLDVPQSWSLIGYFCIGHPERLSDTPELEQEGWEQRFAALPIETR

Sequences:

>Translated_217_residues
MTGPVQEAKGCFPQAFRAELDLLMKLRRDVRRFRTDPVDEAVLTRCLSAISLAPSVGLSEPWRIIRVESETARAAALQNF
ETANAEALADYSEDRAATYARLKLSGMREAPVQIAFFCDDETGKGHGLGARSMPEMRRYSVVTAVTLFWLALRAEGLGLG
WVSVLDPARMARDLDVPQSWSLIGYFCIGHPERLSDTPELEQEGWEQRFAALPIETR
>Mature_216_residues
TGPVQEAKGCFPQAFRAELDLLMKLRRDVRRFRTDPVDEAVLTRCLSAISLAPSVGLSEPWRIIRVESETARAAALQNFE
TANAEALADYSEDRAATYARLKLSGMREAPVQIAFFCDDETGKGHGLGARSMPEMRRYSVVTAVTLFWLALRAEGLGLGW
VSVLDPARMARDLDVPQSWSLIGYFCIGHPERLSDTPELEQEGWEQRFAALPIETR

Specific function: Maybe catalyzes the reduction of Co(2+) to Co(+) in cob(II)yrinic acid A,C-diamide to allow adenosylation to procede [H]

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012825
- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: =1.16.8.1 [H]

Molecular weight: Translated: 24233; Mature: 24102

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPVQEAKGCFPQAFRAELDLLMKLRRDVRRFRTDPVDEAVLTRCLSAISLAPSVGLSE
CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
PWRIIRVESETARAAALQNFETANAEALADYSEDRAATYARLKLSGMREAPVQIAFFCDD
CEEEEEECCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
ETGKGHGLGARSMPEMRRYSVVTAVTLFWLALRAEGLGLGWVSVLDPARMARDLDVPQSW
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHCCCCCCC
SLIGYFCIGHPERLSDTPELEQEGWEQRFAALPIETR
CCEEEEECCCHHHCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TGPVQEAKGCFPQAFRAELDLLMKLRRDVRRFRTDPVDEAVLTRCLSAISLAPSVGLSE
CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
PWRIIRVESETARAAALQNFETANAEALADYSEDRAATYARLKLSGMREAPVQIAFFCDD
CEEEEEECCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
ETGKGHGLGARSMPEMRRYSVVTAVTLFWLALRAEGLGLGWVSVLDPARMARDLDVPQSW
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHCCCCCCC
SLIGYFCIGHPERLSDTPELEQEGWEQRFAALPIETR
CCEEEEECCCHHHCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7635831; 9256491 [H]