| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082408
Identifier: 99082408
GI number: 99082408
Start: 2710393
End: 2710962
Strand: Direct
Name: 99082408
Synonym: TM1040_2568
Alternate gene names: NA
Gene position: 2710393-2710962 (Clockwise)
Preceding gene: 99082394
Following gene: 99082409
Centisome position: 84.67
GC content: 55.96
Gene sequence:
>570_bases ATGTTTTACAAAGACGAACGGCTTGCGCTGTTCATAGATGGCTCGAATTTATATGCCTCCGCCAAGGCATTGGGATTTGA CATCGACTACAAGCTTCTGCGTCAGGAATTCATGCGTCGCGGCAAACTTGTACGGGCTTTCTATTACACGGCGCTGCTTG AAAACGACGAATACTCTCCGATTCGCCCCCTTGTAGATTGGTTGCATTACAATGGATTTTCCATGGTGACCAAACCTGCC AAGGAATACACCGACAGCATGGGCCGTCGGAAGGTGAAGGGCAACATGGACATCGAACTCACGGTTGATGCTATGGAGCT TGCGCCGCGCGTCGATCATATCGTGCTGTTCTCGGGCGACGGTGACTTCCGTCCGCTGATCGCCAGCCTGCAGCGTCAGG GTGTGCGCGTGTCGGTCGTTTCGACGATCCGCAGCCAGCCACCAATGATTTCGGACGAGTTGCGCCGACAGGCCGACAAT TTCATCGAGCTTGAAGAGCTGCGCGATGTCATTGGCCGCCCCCCTCGCGAAGTCCCGAGCGAACCCCGCGCGGTTCCGGC CGAGGATTGA
Upstream 100 bases:
>100_bases GGGAGTGCCAAATAACCTAAATTAAGTCCACCCGCGGCGCCGGAGATTTATTTAACTCACTCACGGAACTTTGGCCCGCG ACACCAGAAGGACACATTTA
Downstream 100 bases:
>100_bases TCGCTGCGCTGCTGCGCGGCGTTCGCCTGATCATCGAGAAACCCCCGGTGCAGATACTGCGGCGGGGGTTTTCTTTTGCA GCCCTGCCCGACCGGCACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MFYKDERLALFIDGSNLYASAKALGFDIDYKLLRQEFMRRGKLVRAFYYTALLENDEYSPIRPLVDWLHYNGFSMVTKPA KEYTDSMGRRKVKGNMDIELTVDAMELAPRVDHIVLFSGDGDFRPLIASLQRQGVRVSVVSTIRSQPPMISDELRRQADN FIELEELRDVIGRPPREVPSEPRAVPAED
Sequences:
>Translated_189_residues MFYKDERLALFIDGSNLYASAKALGFDIDYKLLRQEFMRRGKLVRAFYYTALLENDEYSPIRPLVDWLHYNGFSMVTKPA KEYTDSMGRRKVKGNMDIELTVDAMELAPRVDHIVLFSGDGDFRPLIASLQRQGVRVSVVSTIRSQPPMISDELRRQADN FIELEELRDVIGRPPREVPSEPRAVPAED >Mature_189_residues MFYKDERLALFIDGSNLYASAKALGFDIDYKLLRQEFMRRGKLVRAFYYTALLENDEYSPIRPLVDWLHYNGFSMVTKPA KEYTDSMGRRKVKGNMDIELTVDAMELAPRVDHIVLFSGDGDFRPLIASLQRQGVRVSVVSTIRSQPPMISDELRRQADN FIELEELRDVIGRPPREVPSEPRAVPAED
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21760; Mature: 21760
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFYKDERLALFIDGSNLYASAKALGFDIDYKLLRQEFMRRGKLVRAFYYTALLENDEYSP CCCCCCEEEEEEECCCCEEHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCH IRPLVDWLHYNGFSMVTKPAKEYTDSMGRRKVKGNMDIELTVDAMELAPRVDHIVLFSGD HHHHHHHHHCCCCHHHHHHHHHHHHHHCCEECCCCCCEEEEEEHHHHCCCCCEEEEECCC GDFRPLIASLQRQGVRVSVVSTIRSQPPMISDELRRQADNFIELEELRDVIGRPPREVPS CCHHHHHHHHHHCCCEEEEHHHHHCCCCCHHHHHHHHHCCCEEHHHHHHHHCCCCCCCCC EPRAVPAED CCCCCCCCC >Mature Secondary Structure MFYKDERLALFIDGSNLYASAKALGFDIDYKLLRQEFMRRGKLVRAFYYTALLENDEYSP CCCCCCEEEEEEECCCCEEHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCH IRPLVDWLHYNGFSMVTKPAKEYTDSMGRRKVKGNMDIELTVDAMELAPRVDHIVLFSGD HHHHHHHHHCCCCHHHHHHHHHHHHHHCCEECCCCCCEEEEEEHHHHCCCCCEEEEECCC GDFRPLIASLQRQGVRVSVVSTIRSQPPMISDELRRQADNFIELEELRDVIGRPPREVPS CCHHHHHHHHHHCCCEEEEHHHHHCCCCCHHHHHHHHHCCCEEHHHHHHHHCCCCCCCCC EPRAVPAED CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA