Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99082395

Identifier: 99082395

GI number: 99082395

Start: 2698525

End: 2700408

Strand: Reverse

Name: 99082395

Synonym: TM1040_2555

Alternate gene names: NA

Gene position: 2700408-2698525 (Counterclockwise)

Preceding gene: 99082396

Following gene: 99082393

Centisome position: 84.36

GC content: 58.92

Gene sequence:

>1884_bases
ATGGTTGAGAAGAGCCTGATTGACCTTTCGTGGGACGATTTTGACGAGCATCGCAGCCCGCGTCCCGACCAGAATCAGTT
TGATGCCGTGGTAGAGCGCGCCGTCTCCCGCCGGGGTTTTCTCGGGGGTGCATTGGCCTTTGGATCTGGGGCTGCTGTTT
TTGGCACGGGCCTGATATCGTCCACGACTGCATCGCGGGCACACGCGCACGCAAAATTTGCCTTCACGCCCATCGGCATT
GCCACGGATCATGCGGTTCATGTTCCCGAAGGATACAAATCACAGGTTCTTGTGCGCTGGGGGGATGCGCTCTGGTCTGA
CGCTGAGGGCGCCTATTCCGCCGATACGGGCATTTCGCTTGCGATGTCCGACAAGGTCTTTGGTGAAAACACCGATGGGA
TGGAGCTTTTTGAGGTAGACGGTCGCGAGATTCTCGTCGTGAACTCAGAATATGTGAACCCCAAGATCAACCTGCCCGCG
TCCTCTGAAGGGGTGCCGCAGGATGCAGATGAGGTGCAACTTCTGAAGAATTTGCAGGGCGTCACGGTGATGGAAATCGC
GCGCGGCGCGACAGGGTATCAAGTCGTCAAAGACAGCCCCTACAATCGCCGTATCACGCATGAGACCGAGATGACCCTTG
CCGGTCCGCTCGCCGGGGATGAACTGGTCAAGACCGATGCCGATCCTTCGGGGCGCCGGGTCAAAGGTACGATGAACAAC
TGCGGTTCCGGCAAAACGCTCTGGGGCACCTATCTGACGTGTGAAGAGAACTTCAACGGCTACTTTGGCGCCACCGGCGA
GATGCCGGAGGGCGAGGGCTACATTCGCTATGGCATCGGTGGTGAAGGCCGTTACGCCTACGAGAAGTACGATGATCGCT
ATGACATCTCCAAGGAGCCCAAAGAGCCGCACCGTCATGGCTTTGTGACGGAGATCAACCCGTCGGATGCGACGTCCGTG
CCGGTGAAGCGCACCGCCCTTGGCCGTTTCAAACATGAAAACGCCGAGATGGTGCATGCGGCGGATGGTCGGATCGTTGT
CTATATGGGTGACGATGAGCGGGGTGAGTATCTCTATAAATACGTCTCCACGAACACTTGGACCGAGGGCGCGCCGACGG
AGGGACTTTTGGACGATGGTCAGCTCTATGCCGCCAAGTTCAACGATGACCAGACCGGTGAGTGGTTGGCACTGACGCCT
GAGGCCACAGGTATGTCGGAGGCAGAGATCCTGTGTTTCACCCGTATGGCAGCCTCTGCGGTGGGAGCGACCACCATGGA
TCGCCCCGAATGGGTCGCTTGCAACCCGCTCAAGGCCGAAGGCTATTGCGCGTTGACCAACAACAAGAATCGCGGTGTGA
AGCCCAATGCCGGTGGCGACGACGCATCTGTGAATGGTCCAAACCCGCGCGAAACCAACAAGTATGGCCAGATCGTGCGC
TGGGCCCCCTCGGAGGACAATCACGCCGCCGAAGGCTTCACATGGGATCTCTATGTGATGGCGGGAAATCCAACCGTCTA
CGACAATGCCTACGCCGGGTCTGCCAATGTCAACGCGGGCAATATGTTCAACTCGCCGGACGGGATGGCCTTCTCATCCG
ACGGGATGCTTTGGATTCAAACCGATGGCGATGATGACAACGAGGGTGACTTTGCCGGGCAGGGCAACAACCAGATGTTG
GTTGGTGACCCCGAGTCGGGTGAGATTGCGCGTTTCATGACCGTGCCCAACGGGGCTGAGGTGACAGGCCTGTGCTGGTC
GCTCGACAAGACAGTGGCCTTTGTGGGCGTGCAGCATCCGGGTGGTGCGTGGCCTGATGGTGCGGGCAAGCCGCGGTCGT
CGATCGTGGCGGTCTGGCGCGAAGATGGTGCGATGATCGGCTAA

Upstream 100 bases:

>100_bases
GTCATAAGCATGATACATCGGACCTTGAGAACGCTCTTGAAGCGCGGCCAGTTGAATGTGGCCACGCCCCAGCCAGTGTG
ATCGCAAGGAGCATAGGAAT

Downstream 100 bases:

>100_bases
GGCCGATCCGTGTATCTGTGGCTGGCCCCAATCAACGGGGCCAGTTTGCGCCCTCAGCGTTTGCGATCTGCGGGATAGAC
GCCGAGGATTTCCACATCGG

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: Phosphatase; Tat Pathway Signal Sequence Domain-Containing Protein; Tat Pathway Signal Sequence Domain Protein; Twin-Arginine Translocation Pathway Signal Protein; UxpB Protein; DTDP-Glucose 4 6-Dehydratase; Twin Arginine Translocation Pathway Signal Protein; DTDP-D-Glucose 4 6-Dehydratase; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Alkaline Phosphatase Family Protein; Exported Protein

Number of amino acids: Translated: 627; Mature: 627

Protein sequence:

>627_residues
MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLISSTTASRAHAHAKFAFTPIGI
ATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISLAMSDKVFGENTDGMELFEVDGREILVVNSEYVNPKINLPA
SSEGVPQDADEVQLLKNLQGVTVMEIARGATGYQVVKDSPYNRRITHETEMTLAGPLAGDELVKTDADPSGRRVKGTMNN
CGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIGGEGRYAYEKYDDRYDISKEPKEPHRHGFVTEINPSDATSV
PVKRTALGRFKHENAEMVHAADGRIVVYMGDDERGEYLYKYVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTP
EATGMSEAEILCFTRMAASAVGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVR
WAPSEDNHAAEGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQTDGDDDNEGDFAGQGNNQML
VGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHPGGAWPDGAGKPRSSIVAVWREDGAMIG

Sequences:

>Translated_627_residues
MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLISSTTASRAHAHAKFAFTPIGI
ATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISLAMSDKVFGENTDGMELFEVDGREILVVNSEYVNPKINLPA
SSEGVPQDADEVQLLKNLQGVTVMEIARGATGYQVVKDSPYNRRITHETEMTLAGPLAGDELVKTDADPSGRRVKGTMNN
CGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIGGEGRYAYEKYDDRYDISKEPKEPHRHGFVTEINPSDATSV
PVKRTALGRFKHENAEMVHAADGRIVVYMGDDERGEYLYKYVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTP
EATGMSEAEILCFTRMAASAVGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVR
WAPSEDNHAAEGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQTDGDDDNEGDFAGQGNNQML
VGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHPGGAWPDGAGKPRSSIVAVWREDGAMIG
>Mature_627_residues
MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLISSTTASRAHAHAKFAFTPIGI
ATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISLAMSDKVFGENTDGMELFEVDGREILVVNSEYVNPKINLPA
SSEGVPQDADEVQLLKNLQGVTVMEIARGATGYQVVKDSPYNRRITHETEMTLAGPLAGDELVKTDADPSGRRVKGTMNN
CGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIGGEGRYAYEKYDDRYDISKEPKEPHRHGFVTEINPSDATSV
PVKRTALGRFKHENAEMVHAADGRIVVYMGDDERGEYLYKYVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTP
EATGMSEAEILCFTRMAASAVGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVR
WAPSEDNHAAEGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQTDGDDDNEGDFAGQGNNQML
VGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHPGGAWPDGAGKPRSSIVAVWREDGAMIG

Specific function: Unknown

COG id: COG3211

COG function: function code R; Predicted phosphatase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 67729; Mature: 67729

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLIS
CCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCHHC
STTASRAHAHAKFAFTPIGIATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISL
CCCHHHHHCEEEEEEEECCCCCCCEEECCCCCCCEEEEEECCHHHCCCCCCEECCCCEEE
AMSDKVFGENTDGMELFEVDGREILVVNSEYVNPKINLPASSEGVPQDADEVQLLKNLQG
EEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHCCC
VTVMEIARGATGYQVVKDSPYNRRITHETEMTLAGPLAGDELVKTDADPSGRRVKGTMNN
CEEEHHHCCCCCEEEEECCCCCCEEEECCCEEEECCCCCCHHEECCCCCCCCEEEECCCC
CGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIGGEGRYAYEKYDDRYDISKEP
CCCCCEEEEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCCCCEEHHCCCCCCCCCCCC
KEPHRHGFVTEINPSDATSVPVKRTALGRFKHENAEMVHAADGRIVVYMGDDERGEYLYK
CCHHHCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCCEEEE
YVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTPEATGMSEAEILCFTRMAASA
EECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHH
VGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVR
HCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
WAPSEDNHAAEGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQ
ECCCCCCCCCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEE
TDGDDDNEGDFAGQGNNQMLVGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHP
ECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEECC
GGAWPDGAGKPRSSIVAVWREDGAMIG
CCCCCCCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLIS
CCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCHHC
STTASRAHAHAKFAFTPIGIATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISL
CCCHHHHHCEEEEEEEECCCCCCCEEECCCCCCCEEEEEECCHHHCCCCCCEECCCCEEE
AMSDKVFGENTDGMELFEVDGREILVVNSEYVNPKINLPASSEGVPQDADEVQLLKNLQG
EEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHCCC
VTVMEIARGATGYQVVKDSPYNRRITHETEMTLAGPLAGDELVKTDADPSGRRVKGTMNN
CEEEHHHCCCCCEEEEECCCCCCEEEECCCEEEECCCCCCHHEECCCCCCCCEEEECCCC
CGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIGGEGRYAYEKYDDRYDISKEP
CCCCCEEEEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCCCCEEHHCCCCCCCCCCCC
KEPHRHGFVTEINPSDATSVPVKRTALGRFKHENAEMVHAADGRIVVYMGDDERGEYLYK
CCHHHCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCCEEEE
YVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTPEATGMSEAEILCFTRMAASA
EECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHH
VGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVR
HCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
WAPSEDNHAAEGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQ
ECCCCCCCCCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEE
TDGDDDNEGDFAGQGNNQMLVGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHP
ECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEECC
GGAWPDGAGKPRSSIVAVWREDGAMIG
CCCCCCCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA