| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082382
Identifier: 99082382
GI number: 99082382
Start: 2684043
End: 2684927
Strand: Reverse
Name: 99082382
Synonym: TM1040_2542
Alternate gene names: NA
Gene position: 2684927-2684043 (Counterclockwise)
Preceding gene: 99082383
Following gene: 99082381
Centisome position: 83.88
GC content: 59.77
Gene sequence:
>885_bases ATGAGTGAAACGGGCAATAAAAAGACAGTAAAGATCCACGAGGGCGATCCAAACACCACCGGCCACGAGTGGGACGGGAT CATGGAATTCGACAACCCGATGCCGCGCTGGTGGCTGTGGGTGTTCTACGCCACGATCATCTGGGGCATCGGATATACCA TCGCCTATCCTGCATGGCCGATGGTCAGCGCGGCCACCTCCGGGATCACCGGATGGTCTTCGCGTGGTCAGGTCGAGGCC GAGATTGCCGCCGTCGATGAGGCCAACGCGCCCATCAACGCCCAGCTCGAAGCGCTGGAACTTGCCGCCATTCCGGGCCA TCCCGAGCTTGAGGGCTACGCCGTCTCTGCCGGGGCCGCCGTCTTCAAGACATGGTGTGCGCAGTGTCACGGGTCTGGTG CGGCGGGGGCCAAAGGCTATCCGAACCTCTTGGATGATGACTGGCTCTGGGGTGGCACGATGGAAGACATTCATGCCACG GTCTCTTATGGCATTCGCAACGAGGAAAGCGACGATGCCCGCTATTCCGCAATGCCCGCCTTTGGTCGTGATGAACTGCT CCAAAAAGAAGAGGTCAGTCAGGTCGTAAACTACGTGATGTCCCTGTCAGACACGCCCAAAGACGCAAGCGAAGTGGCTG CGGGCGCGGTTGTGTTCGAAGAAAACTGCGCCTCCTGTCATGGGGCGGACGCATCGGGTGATATCTACCAAGGTGCGCCG AACCTGAAGGACGCGATCTGGCTCTATGGGGGCGACTACGACACTCTCTACGAGACAGTCTGGAACTCGCGTTTTGGGGT CATGCCGAACTGGGACAGCCGTCTGAGCGAAGCTGAGATCCGCGCAGTCAGCGCCTATGTCCACCAATTGGGTGGCGGCG AGTAA
Upstream 100 bases:
>100_bases GCCCGGGTTCCACCAAAACCTATGAGGACACAGCCAACATCCCCTTCCGCAACGCGGACAAGCCGGCGTCCGAGCGCGCC GCTCAACCGGAGGCCCAGCA
Downstream 100 bases:
>100_bases GCGCCATAACACTGAAAAGACTGGGCCGCTCCATCTGGGGCGGCCCTTTTCGTTTGGGGGACAATGGCGTCCAAGCCTCT AGAATCCAGGCTCTAGCGAC
Product: cytochrome c oxidase, cbb3-type, subunit III
Products: ferricytochrome c; H2O
Alternate protein names: Cbb3-Type Cytochrome C Oxidase Subunit III; Cytochrome C Class I; Cytochrome-C Oxidase FixP Chain; Cb-Type Cytochrome C Oxidase Subunit III; Cytochrome C Oxidase Subunit CcoP; Cytochrome C Oxidase Subunit III; Cytochrome C; Cytochrome-Cbb3 Oxidase Subunit III; Cytochrome C Subfamily; Cytochrome C Oxidase Subunit; Cytochrome C Oxidase; Cytochrome-C Oxidase Subunit III; Cytochrome C Mono- And Diheme Variant; Cytochrome C Oxidase CcoP Subunit; FixP2 Diheme C-Type Cytochrome; Class I Cytochrome C; Cytochrome C Mono- And Diheme Variants; FixP Protein; Cytochrome Oxidase Component Cytochrome C Protein; Cytochrome C Oxidase Cbb3-Type Di-Heme Subunit III; FixP3 Cytochrome C Oxidase Membrane Anchored Subunit; Gluconate 2-Dehydrogenase; Cytochrome Cbb3 Oxidase Diheme Subunit Membrane-Bound CcoP; Cbb3-Type Cytochrome C Oxidase Subunit CcoP; Membrane-Anchored Cbb3 Cytochrome Oxidase Subunit; Cytochrome C Oxidase Transmembrane Protein; Cytochrome C Oxidase Diheme Subunit Membrane-Bound; Cytochrome C Oxidase Protein FixP Chain; Cbb3 Oxidase Subunit III; Cytochrome C Oxidase FixP Chain Protein; Diheme Cytochrome C
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MSETGNKKTVKIHEGDPNTTGHEWDGIMEFDNPMPRWWLWVFYATIIWGIGYTIAYPAWPMVSAATSGITGWSSRGQVEA EIAAVDEANAPINAQLEALELAAIPGHPELEGYAVSAGAAVFKTWCAQCHGSGAAGAKGYPNLLDDDWLWGGTMEDIHAT VSYGIRNEESDDARYSAMPAFGRDELLQKEEVSQVVNYVMSLSDTPKDASEVAAGAVVFEENCASCHGADASGDIYQGAP NLKDAIWLYGGDYDTLYETVWNSRFGVMPNWDSRLSEAEIRAVSAYVHQLGGGE
Sequences:
>Translated_294_residues MSETGNKKTVKIHEGDPNTTGHEWDGIMEFDNPMPRWWLWVFYATIIWGIGYTIAYPAWPMVSAATSGITGWSSRGQVEA EIAAVDEANAPINAQLEALELAAIPGHPELEGYAVSAGAAVFKTWCAQCHGSGAAGAKGYPNLLDDDWLWGGTMEDIHAT VSYGIRNEESDDARYSAMPAFGRDELLQKEEVSQVVNYVMSLSDTPKDASEVAAGAVVFEENCASCHGADASGDIYQGAP NLKDAIWLYGGDYDTLYETVWNSRFGVMPNWDSRLSEAEIRAVSAYVHQLGGGE >Mature_293_residues SETGNKKTVKIHEGDPNTTGHEWDGIMEFDNPMPRWWLWVFYATIIWGIGYTIAYPAWPMVSAATSGITGWSSRGQVEAE IAAVDEANAPINAQLEALELAAIPGHPELEGYAVSAGAAVFKTWCAQCHGSGAAGAKGYPNLLDDDWLWGGTMEDIHATV SYGIRNEESDDARYSAMPAFGRDELLQKEEVSQVVNYVMSLSDTPKDASEVAAGAVVFEENCASCHGADASGDIYQGAPN LKDAIWLYGGDYDTLYETVWNSRFGVMPNWDSRLSEAEIRAVSAYVHQLGGGE
Specific function: Unknown
COG id: COG2010
COG function: function code C; Cytochrome c, mono- and diheme variants
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.9.3.1
Molecular weight: Translated: 31915; Mature: 31784
Theoretical pI: Translated: 4.08; Mature: 4.08
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETGNKKTVKIHEGDPNTTGHEWDGIMEFDNPMPRWWLWVFYATIIWGIGYTIAYPAWP CCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCHHHHCCCCH MVSAATSGITGWSSRGQVEAEIAAVDEANAPINAQLEALELAAIPGHPELEGYAVSAGAA HHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCEEEECHHH VFKTWCAQCHGSGAAGAKGYPNLLDDDWLWGGTMEDIHATVSYGIRNEESDDARYSAMPA HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCC FGRDELLQKEEVSQVVNYVMSLSDTPKDASEVAAGAVVFEENCASCHGADASGDIYQGAP CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCC NLKDAIWLYGGDYDTLYETVWNSRFGVMPNWDSRLSEAEIRAVSAYVHQLGGGE CCCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SETGNKKTVKIHEGDPNTTGHEWDGIMEFDNPMPRWWLWVFYATIIWGIGYTIAYPAWP CCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCHHHHCCCCH MVSAATSGITGWSSRGQVEAEIAAVDEANAPINAQLEALELAAIPGHPELEGYAVSAGAA HHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCEEEECHHH VFKTWCAQCHGSGAAGAKGYPNLLDDDWLWGGTMEDIHATVSYGIRNEESDDARYSAMPA HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCC FGRDELLQKEEVSQVVNYVMSLSDTPKDASEVAAGAVVFEENCASCHGADASGDIYQGAP CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCC NLKDAIWLYGGDYDTLYETVWNSRFGVMPNWDSRLSEAEIRAVSAYVHQLGGGE CCCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ferrocytochrome c; O2
Specific reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA