Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 99082364

GI number: 99082364

Start: 2664552

End: 2665313

Strand: Reverse

Name: yadH [H]

Synonym: TM1040_2524

Alternate gene names: 99082364

Gene position: 2665313-2664552 (Counterclockwise)

Preceding gene: 99082365

Following gene: 99082363

Centisome position: 83.27

GC content: 53.81

Gene sequence:

>762_bases
ATGAACTGGACTGCTATTGCCGCCATTTACCGTTTTGAAATGGCGAGATTTTTTCGCACGCTTGCGCAGAGTTTCATCTC
TCCGGTTCTGTCGACTTCTCTTTACTTCGTGGTGTTTGGCGCGGCCATCGGCAGTCGCATTGATGAGGTCGAAGGCGTCT
CTTACGGGGCGTTTATTGTGCCGGGGCTCATCATGCTCAGCGTCATTACACAAGGGATCTCAAACGCATCCTTCGGGATC
TATTTCCCCAAGTTCATTGGGACGATCTATGAGCTCTTGTCGGCACCGGTCAATTTCCTCGAAATTGTTCTGGGCTACGT
CGGTGCCGCCGCGACCAAGGCGCTGTTTATTGGGGTTGTGATCCTCGGCACGGCCTATCTCTTTGTGGATATTACCATCG
CGCATCCATTTGCGATGATCCTGTTCCTGGTTCTGACGTGCATCAGTTTTGCGCTCTTGGGGTTCATCATCGGGATTTGG
GCCAAGAATTTTGAGCAACTCCAGCTGGTGCCGCTGCTGATCATCACACCGCTGATCTTTCTCGGGGGCTCGTTCTACTC
GATTTCGATGCTGCCGCCGGTTTGGCAGACAATCACCCTGTTCAACCCGGTTGTCTATCTGATCTCGGGCTTTCGCTGGT
CTTTCTTTGGGGTGGCGGATGTTCCGATTGGATTGAGCCTTCTGGCCATCGCGCTGTTCACCGGCTTGTGCTTGCTGGTG
ATTGGCTGGATTTTCCGCTCGGGCTGGCGCTTGCGCTCCTGA

Upstream 100 bases:

>100_bases
TGAATGATGTGGCCGCCGCTGGGCTGGTGCTGGCGGATGTATCGACACGCCAATCCAGCCTCGAAGACATCTTTGTCGGG
CTTGTATCTGGAGAAGACGC

Downstream 100 bases:

>100_bases
CTTCCGGGGCTCTCCCGCCAGTCACGCCTGCATTGGAATGCAGTCCCGCCCGTTGGGCCGAGCGCCGCCCCCCCTGAGGA
GGGCGGCGCGGCTGCGTCAG

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNWTAIAAIYRFEMARFFRTLAQSFISPVLSTSLYFVVFGAAIGSRIDEVEGVSYGAFIVPGLIMLSVITQGISNASFGI
YFPKFIGTIYELLSAPVNFLEIVLGYVGAAATKALFIGVVILGTAYLFVDITIAHPFAMILFLVLTCISFALLGFIIGIW
AKNFEQLQLVPLLIITPLIFLGGSFYSISMLPPVWQTITLFNPVVYLISGFRWSFFGVADVPIGLSLLAIALFTGLCLLV
IGWIFRSGWRLRS

Sequences:

>Translated_253_residues
MNWTAIAAIYRFEMARFFRTLAQSFISPVLSTSLYFVVFGAAIGSRIDEVEGVSYGAFIVPGLIMLSVITQGISNASFGI
YFPKFIGTIYELLSAPVNFLEIVLGYVGAAATKALFIGVVILGTAYLFVDITIAHPFAMILFLVLTCISFALLGFIIGIW
AKNFEQLQLVPLLIITPLIFLGGSFYSISMLPPVWQTITLFNPVVYLISGFRWSFFGVADVPIGLSLLAIALFTGLCLLV
IGWIFRSGWRLRS
>Mature_253_residues
MNWTAIAAIYRFEMARFFRTLAQSFISPVLSTSLYFVVFGAAIGSRIDEVEGVSYGAFIVPGLIMLSVITQGISNASFGI
YFPKFIGTIYELLSAPVNFLEIVLGYVGAAATKALFIGVVILGTAYLFVDITIAHPFAMILFLVLTCISFALLGFIIGIW
AKNFEQLQLVPLLIITPLIFLGGSFYSISMLPPVWQTITLFNPVVYLISGFRWSFFGVADVPIGLSLLAIALFTGLCLLV
IGWIFRSGWRLRS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=251, Percent_Identity=41.4342629482072, Blast_Score=197, Evalue=8e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 27802; Mature: 27802

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]