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The map label for this gene is ydcN [H]

Identifier: 99082324

GI number: 99082324

Start: 2623072

End: 2623635

Strand: Reverse

Name: ydcN [H]

Synonym: TM1040_2484

Alternate gene names: 99082324

Gene position: 2623635-2623072 (Counterclockwise)

Preceding gene: 99082327

Following gene: 99082323

Centisome position: 81.96

GC content: 60.99

Gene sequence:

>564_bases
ATGAGCGACGAAAGTATCACGTTGAACTTACGCGAAATTCGCGCGGCGGCGGGTCTGAGTTTGTCCCGGGCTGCGGAACT
TACCGGGGTCAGCAAGGCGATGCTTGGGCAGATAGAACGCGGCGAATCCAGCCCGACGATCGCGACGCTGTGGAAGATCG
CCAAAGGCTTCCACCTCCCTCTGACGGCGCTGATTGAAGAGAGCACCCGGCCCTCGGGGCGCAGTGGTGAAGTCTATCGC
ACGGTCGAGTTTCCCGGCAGCATCGCAGTCAAAATCGTCTTTCCCTATGACCCAAGCCTGGGCGCAGAAACATTTCACGT
CAGCCTCAAACCCGGGCAAAGCCATGAGTCGCTGCCCCATGATACGGGCGTGACGGAAGAGGTCTTTGTGCTTGAGGGGC
GTATGGAGGTGCTGCGGGACGGTGACTGGGTTGCGCTGGAGACAGGGCAGGGCTTGCGGTTTGATGCCGATCAGCCGCAT
GGGTATCGCAGCCTGAGCACGGGAGCCGCCTTTCTGAATATGCACCACTACCGGCAGGCGGCCCTGTCACGCGCGGCAGA
TTGA

Upstream 100 bases:

>100_bases
TTATAGCGCACACTACAGTTCGTGCGCTATAACGCACAAGTCATTTTTTCTATGGCCCGTGGATGAGGGCCGCATTGGCC
AAAATGGTCAGGGGAGCAGC

Downstream 100 bases:

>100_bases
CGCCACTGGCTTGTCCTGCGGTTGTGAATGCGCGTACCACTGAGCGCAAGATTTTCGATCAGGGCATTCAGTATGGAACG
TGACACCCTGCGAGGCAGCC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSDESITLNLREIRAAAGLSLSRAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALIEESTRPSGRSGEVYR
TVEFPGSIAVKIVFPYDPSLGAETFHVSLKPGQSHESLPHDTGVTEEVFVLEGRMEVLRDGDWVALETGQGLRFDADQPH
GYRSLSTGAAFLNMHHYRQAALSRAAD

Sequences:

>Translated_187_residues
MSDESITLNLREIRAAAGLSLSRAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALIEESTRPSGRSGEVYR
TVEFPGSIAVKIVFPYDPSLGAETFHVSLKPGQSHESLPHDTGVTEEVFVLEGRMEVLRDGDWVALETGQGLRFDADQPH
GYRSLSTGAAFLNMHHYRQAALSRAAD
>Mature_186_residues
SDESITLNLREIRAAAGLSLSRAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALIEESTRPSGRSGEVYRT
VEFPGSIAVKIVFPYDPSLGAETFHVSLKPGQSHESLPHDTGVTEEVFVLEGRMEVLRDGDWVALETGQGLRFDADQPHG
YRSLSTGAAFLNMHHYRQAALSRAAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=159, Percent_Identity=45.2830188679245, Blast_Score=144, Evalue=2e-36,
Organism=Escherichia coli, GI1787557, Length=178, Percent_Identity=30.3370786516854, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20319; Mature: 20188

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDESITLNLREIRAAAGLSLSRAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFHLP
CCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
LTALIEESTRPSGRSGEVYRTVEFPGSIAVKIVFPYDPSLGAETFHVSLKPGQSHESLPH
HHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCC
DTGVTEEVFVLEGRMEVLRDGDWVALETGQGLRFDADQPHGYRSLSTGAAFLNMHHYRQA
CCCCCCEEEEECCHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHH
ALSRAAD
HHHHCCC
>Mature Secondary Structure 
SDESITLNLREIRAAAGLSLSRAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFHLP
CCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
LTALIEESTRPSGRSGEVYRTVEFPGSIAVKIVFPYDPSLGAETFHVSLKPGQSHESLPH
HHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCC
DTGVTEEVFVLEGRMEVLRDGDWVALETGQGLRFDADQPHGYRSLSTGAAFLNMHHYRQA
CCCCCCEEEEECCHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHH
ALSRAAD
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]