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The map label for this gene is pecS [H]

Identifier: 99082294

GI number: 99082294

Start: 2596656

End: 2597144

Strand: Reverse

Name: pecS [H]

Synonym: TM1040_2454

Alternate gene names: 99082294

Gene position: 2597144-2596656 (Counterclockwise)

Preceding gene: 99082296

Following gene: 99082290

Centisome position: 81.14

GC content: 59.1

Gene sequence:

>489_bases
ATGGATCATGTGGACTTCGTTTTAGAGCAATGGCGACGGGAACGCCCCGACCTTGATGTCACCGCAATGGGGGTGATCGG
CCGGGTGAGCAGGCTTCAGCTTGAATACTCCAAGGCAATGGCGAAAACCTTTGCCAGCTTTGGGTTGAACGGTGCGAAGT
TCGATGTTCTGGCGACCCTGCGGCGTGCTGGGGTTCCGCATTGTCTCTCTGCCGGAGACCTCATGAAGGCAACGATGGTG
GCTTCCGGGACGATGACAAACCGGATCGATCGTCTTGAGGCGGACGGGCTGGTCACGCGTACGACAAATCCCAGCGATAG
CCGGAGTTTCCTGATTGCGCTGACCGACAAGGGGATTGCTCTGATCGATCAGGTCGTCGAGGCACATGTGGCCACGCAGG
CTTCGCTTCTTGAGGGGCTGTCGACGGCCGACGTGGAAAATCTGGCGCAGCTTTTGTCAAAGGCCCTGACCGCCGCAGGC
CGCAGCTGA

Upstream 100 bases:

>100_bases
TACTCTTGTATATCTTGATGTCGAGATAATTGACGTATGTCTCGATGTCAAGATATATGCCGACATTGACGTTCTTCGTG
CGGCGGCACATTACTGGCAA

Downstream 100 bases:

>100_bases
CGTGGCGCACCCCTCATGGAGCGGCGCAAGTGCTGGTGCCCATCAGCTGGACGGATACCTCGGACCCAGCGTGGTGCGCG
ATCAGAAGTCCTCGTAAAAG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MDHVDFVLEQWRRERPDLDVTAMGVIGRVSRLQLEYSKAMAKTFASFGLNGAKFDVLATLRRAGVPHCLSAGDLMKATMV
ASGTMTNRIDRLEADGLVTRTTNPSDSRSFLIALTDKGIALIDQVVEAHVATQASLLEGLSTADVENLAQLLSKALTAAG
RS

Sequences:

>Translated_162_residues
MDHVDFVLEQWRRERPDLDVTAMGVIGRVSRLQLEYSKAMAKTFASFGLNGAKFDVLATLRRAGVPHCLSAGDLMKATMV
ASGTMTNRIDRLEADGLVTRTTNPSDSRSFLIALTDKGIALIDQVVEAHVATQASLLEGLSTADVENLAQLLSKALTAAG
RS
>Mature_162_residues
MDHVDFVLEQWRRERPDLDVTAMGVIGRVSRLQLEYSKAMAKTFASFGLNGAKFDVLATLRRAGVPHCLSAGDLMKATMV
ASGTMTNRIDRLEADGLVTRTTNPSDSRSFLIALTDKGIALIDQVVEAHVATQASLLEGLSTADVENLAQLLSKALTAAG
RS

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17432; Mature: 17432

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHVDFVLEQWRRERPDLDVTAMGVIGRVSRLQLEYSKAMAKTFASFGLNGAKFDVLATL
CCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RRAGVPHCLSAGDLMKATMVASGTMTNRIDRLEADGLVTRTTNPSDSRSFLIALTDKGIA
HHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCHH
LIDQVVEAHVATQASLLEGLSTADVENLAQLLSKALTAAGRS
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDHVDFVLEQWRRERPDLDVTAMGVIGRVSRLQLEYSKAMAKTFASFGLNGAKFDVLATL
CCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RRAGVPHCLSAGDLMKATMVASGTMTNRIDRLEADGLVTRTTNPSDSRSFLIALTDKGIA
HHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCHH
LIDQVVEAHVATQASLLEGLSTADVENLAQLLSKALTAAGRS
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]