Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082273

Identifier: 99082273

GI number: 99082273

Start: 2573544

End: 2574128

Strand: Direct

Name: 99082273

Synonym: TM1040_2433

Alternate gene names: NA

Gene position: 2573544-2574128 (Clockwise)

Preceding gene: 99082272

Following gene: 99082274

Centisome position: 80.4

GC content: 58.8

Gene sequence:

>585_bases
ATGTTGCGCACCATTGCCCTTCTGGCCCTGACCGTTTTTGTCGCCGCCTGCACACCGCCCAGCCCGGATGACGCGCTGCG
TGATTTGGGTAGCTTCAAGCTCGGCCACAACATCGTGGTGGCGCCCAAGGTCCAGATGGTTCCTGGCTCTCGCCCAGTTG
AAGCACAGGAATGGGTGGATCTCCTGACCAATGAGATGTCCACGCGGTTCTCGCAATATGAGGGTGATCAACTCTATCAC
TTTGGCCTGAGCGTGGAGGGGTATTTTGTCGCTCCCGGCGGCGTGCCACTGGTCTTGAGCCCAAAATCCGTGCTCGCCAT
CAAGGTCACGGTCTGGGATGACGCGGCAAACAAGAAGCTGAACGACGAGCCCAAGACCTTTACCGTGTTTGAGACCACTT
CGGGCGAGAGCTTCTTGGTTGGCTCAGGGCACGCGCGCACACGCGAGGAACAAATGCTCGGACTGGCGCGCAATGCCGTC
CGTGAAATCGAGACCTGGATGGAAGAACAGCACAAGGAGAACGGCTGGTTTGACGCCCAGATCGAGAACCCAGAGGAAAA
TGCCGCTGTCGCGGCCAGCGAATAG

Upstream 100 bases:

>100_bases
CGCAACCGCGCGAGGGTTCGCTTTTGTGCGGGTTTACCGGAAGGGAAATCCCGGTCTATCACTTGGCGACCCTGATCCCA
GAGCGAGATAGAGAAATTTG

Downstream 100 bases:

>100_bases
CATGTTTGTCAAGAACGAACCGCTTGATTTTTGCGCGCAAACCAAATAAGCCGCGCGCGCAGAGGAAACCGGGTCTGATG
TGGACCCCCCAATTTTCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MLRTIALLALTVFVAACTPPSPDDALRDLGSFKLGHNIVVAPKVQMVPGSRPVEAQEWVDLLTNEMSTRFSQYEGDQLYH
FGLSVEGYFVAPGGVPLVLSPKSVLAIKVTVWDDAANKKLNDEPKTFTVFETTSGESFLVGSGHARTREEQMLGLARNAV
REIETWMEEQHKENGWFDAQIENPEENAAVAASE

Sequences:

>Translated_194_residues
MLRTIALLALTVFVAACTPPSPDDALRDLGSFKLGHNIVVAPKVQMVPGSRPVEAQEWVDLLTNEMSTRFSQYEGDQLYH
FGLSVEGYFVAPGGVPLVLSPKSVLAIKVTVWDDAANKKLNDEPKTFTVFETTSGESFLVGSGHARTREEQMLGLARNAV
REIETWMEEQHKENGWFDAQIENPEENAAVAASE
>Mature_194_residues
MLRTIALLALTVFVAACTPPSPDDALRDLGSFKLGHNIVVAPKVQMVPGSRPVEAQEWVDLLTNEMSTRFSQYEGDQLYH
FGLSVEGYFVAPGGVPLVLSPKSVLAIKVTVWDDAANKKLNDEPKTFTVFETTSGESFLVGSGHARTREEQMLGLARNAV
REIETWMEEQHKENGWFDAQIENPEENAAVAASE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21363; Mature: 21363

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTIALLALTVFVAACTPPSPDDALRDLGSFKLGHNIVVAPKVQMVPGSRPVEAQEWVD
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECEEEECCCCCCCCHHHHHH
LLTNEMSTRFSQYEGDQLYHFGLSVEGYFVAPGGVPLVLSPKSVLAIKVTVWDDAANKKL
HHHHHHHHHHHHCCCCEEEEECCEECEEEECCCCEEEEECCCCEEEEEEEEECCCCCCCC
NDEPKTFTVFETTSGESFLVGSGHARTREEQMLGLARNAVREIETWMEEQHKENGWFDAQ
CCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
IENPEENAAVAASE
ECCCCCCCEEEECC
>Mature Secondary Structure
MLRTIALLALTVFVAACTPPSPDDALRDLGSFKLGHNIVVAPKVQMVPGSRPVEAQEWVD
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECEEEECCCCCCCCHHHHHH
LLTNEMSTRFSQYEGDQLYHFGLSVEGYFVAPGGVPLVLSPKSVLAIKVTVWDDAANKKL
HHHHHHHHHHHHCCCCEEEEECCEECEEEECCCCEEEEECCCCEEEEEEEEECCCCCCCC
NDEPKTFTVFETTSGESFLVGSGHARTREEQMLGLARNAVREIETWMEEQHKENGWFDAQ
CCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
IENPEENAAVAASE
ECCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA