| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082248
Identifier: 99082248
GI number: 99082248
Start: 2546676
End: 2548091
Strand: Direct
Name: 99082248
Synonym: TM1040_2408
Alternate gene names: NA
Gene position: 2546676-2548091 (Clockwise)
Preceding gene: 99082246
Following gene: 99082253
Centisome position: 79.56
GC content: 60.03
Gene sequence:
>1416_bases TTGACCTCCTGCCAGCGCGGACTTAGCCTTGGGACGACCCTCAATGGCTCGACCTGGATCCCAATGACACTCAGTACCAC CAATCAGAGCCTGATGGCGCGCGTTGTGCGTTCGACGTCATGGATCGTTCTGGGGTTTGGGACTGGCCAGATCCTGCGAC TCGGGTCGAATTTGTTGCTGACGCGCATCCTCTTTCCCGAAGCCTTTGGGCTCATGGCTCTGGTCACTGTGATCATCATT GGCCTCTCGCTGTTTTCGGATATGGGCATTTCCAATGCCATCGCGCAAAACCCCCGAGGCGATGAGCCGGATTTTCTCGA CTCCGCCTGGACCGTTCAAATTATCCGGGGCGGGCTCCTGTGGCTGCTGACCTGCGCCCTCGCCCTGCCTGCCGCTTCTT TTTATGACGCCCCCGAACTGGCCTATTGCCTGCCGATCGCGGGGTTTAGTCTGGTCCTACAGGGGCTTTTACCGACACGG GTCGAGACGGCGTATCGCCATCTCCTTGTAGGGCGGGTGACGGCGATCAACCTCATGGCACAGGCCTGTGGCATCCTCTG CATGGTGACACTTGCCATCTGGACCCAATCGGTGATCGCACTCGCGATTGGCACTGTCGTTCAGGAAGGTGCCAAACTGG CATTTGTGCACTGGACGCTACCCGGGCGGCGCAACAGCCTGCGGTGGGAGCCCGCAGCCACGCATGAGCTGATCGGCATG GGCAAGTGGATCTTCCTTTCCACGGCCTGCTTCTTTCTCACGACCCAGGGCGACCGGGCGATCCTGGGCAAATACCTCTC GCTTGAGGCGATGGGCATCTACAATATCGCGTTCTTTCTGGCGAATTTTCCAGTCCAACTGGGCCAGGACGTCAATCAAC GCCTCATGATCCCGGTCTATCGCGACAAGCCAGCGCTTGAGAGTGACGAAAACCGGCGCAAACAGCGCCAGCTTCGCTAC GCGCTCACGGGGGGGATCCTGTCGATCCTGTGGCTGATGGCATGGATTGGTCCGTGGCTTGTGGAGCTCTTGTATGATGA TCGCTATGCGGCGGCCGGGCCGGTGATCGTTCTGCTTGCGAGCAGTCTGGCCCCGTCGATCATCGTCCTGACCTACGATC GTGCCGCGCTGGCTGCTGGCGACACCAAGCGATTCTTCTTTTACACGGCCACCCGCGCCTTTGTTCAGACTGCACTGTTT CTGGCCGGGGTCACCCAGTTTGGACTGGTGGGAGGCATTGCGGCGATGGGGCTGGCTGTTTTCTGCTCCTACCCGACATT GATGCGACACACGCGCCCTTACCGGGCTCAGGACCCCGGGCACGATCTGGTCTATCTGACCGCCAGCCTCGTGATGTGTG GGAGCGCACTCTGGTACCACTGGCCCAAAATCGCAGCCAGTGTCGGGGTCATGTAA
Upstream 100 bases:
>100_bases GGATCACCGGATTTTGCCCAGACTGAACCACCTCGCGCGCTCTTTTGCGCACACCCGTGGTCCAAAAGGCTACCCCACCC CATCTGCCCCGGTGCGGCGA
Downstream 100 bases:
>100_bases CCAAATGCCTAGCTACGCGCGTGCCGTTCCGTGCCGCGTCCGCCCAGCGCAAAGAGGCGTGCAAACAGACCTTTTTTGCG CGTCGTCAGAACCGGGATCG
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: Polysaccharide Export Protein; Biosynthesis Of Teichuronic Acid; Export Protein; Colanic Acid Exporter
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MTSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLLTRILFPEAFGLMALVTVIII GLSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLLWLLTCALALPAASFYDAPELAYCLPIAGFSLVLQGLLPTR VETAYRHLLVGRVTAINLMAQACGILCMVTLAIWTQSVIALAIGTVVQEGAKLAFVHWTLPGRRNSLRWEPAATHELIGM GKWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFLANFPVQLGQDVNQRLMIPVYRDKPALESDENRRKQRQLRY ALTGGILSILWLMAWIGPWLVELLYDDRYAAAGPVIVLLASSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALF LAGVTQFGLVGGIAAMGLAVFCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM
Sequences:
>Translated_471_residues MTSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLLTRILFPEAFGLMALVTVIII GLSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLLWLLTCALALPAASFYDAPELAYCLPIAGFSLVLQGLLPTR VETAYRHLLVGRVTAINLMAQACGILCMVTLAIWTQSVIALAIGTVVQEGAKLAFVHWTLPGRRNSLRWEPAATHELIGM GKWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFLANFPVQLGQDVNQRLMIPVYRDKPALESDENRRKQRQLRY ALTGGILSILWLMAWIGPWLVELLYDDRYAAAGPVIVLLASSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALF LAGVTQFGLVGGIAAMGLAVFCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM >Mature_470_residues TSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLLTRILFPEAFGLMALVTVIIIG LSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLLWLLTCALALPAASFYDAPELAYCLPIAGFSLVLQGLLPTRV ETAYRHLLVGRVTAINLMAQACGILCMVTLAIWTQSVIALAIGTVVQEGAKLAFVHWTLPGRRNSLRWEPAATHELIGMG KWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFLANFPVQLGQDVNQRLMIPVYRDKPALESDENRRKQRQLRYA LTGGILSILWLMAWIGPWLVELLYDDRYAAAGPVIVLLASSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALFL AGVTQFGLVGGIAAMGLAVFCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51542; Mature: 51411
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLL CCCCHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHCCHHHH TRILFPEAFGLMALVTVIIIGLSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHCCHHHHHHHHHHHH WLLTCALALPAASFYDAPELAYCLPIAGFSLVLQGLLPTRVETAYRHLLVGRVTAINLMA HHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH QACGILCMVTLAIWTQSVIALAIGTVVQEGAKLAFVHWTLPGRRNSLRWEPAATHELIGM HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHC GKWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFLANFPVQLGQDVNQRLMIPVY CHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEE RDKPALESDENRRKQRQLRYALTGGILSILWLMAWIGPWLVELLYDDRYAAAGPVIVLLA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH SSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALFLAGVTQFGLVGGIAAMGLAV HHCCCEEEEEEECCHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM HHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLL CCCHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHCCHHHH TRILFPEAFGLMALVTVIIIGLSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHCCHHHHHHHHHHHH WLLTCALALPAASFYDAPELAYCLPIAGFSLVLQGLLPTRVETAYRHLLVGRVTAINLMA HHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH QACGILCMVTLAIWTQSVIALAIGTVVQEGAKLAFVHWTLPGRRNSLRWEPAATHELIGM HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHC GKWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFLANFPVQLGQDVNQRLMIPVY CHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEE RDKPALESDENRRKQRQLRYALTGGILSILWLMAWIGPWLVELLYDDRYAAAGPVIVLLA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH SSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALFLAGVTQFGLVGGIAAMGLAV HHCCCEEEEEEECCHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM HHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA