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The map label for this gene is ytfM [H]

Identifier: 99082235

GI number: 99082235

Start: 2518778

End: 2520610

Strand: Direct

Name: ytfM [H]

Synonym: TM1040_2395

Alternate gene names: 99082235

Gene position: 2518778-2520610 (Clockwise)

Preceding gene: 99082234

Following gene: 99082236

Centisome position: 78.69

GC content: 62.19

Gene sequence:

>1833_bases
ATGTTCAGATTTTGCCAATTGCGCCGGACTGCCTTTCCCCTGTGCCGCACTCTGCGCCCCTTGTCGCTGGCCTTGAGCCT
GAGTGTCGCCCTATCGGCCAGCCCCCTGTCGGCGCTGGATGCAAACCTCGCCGCTCCCAAGGCACCGGACGATCTCGCCG
AACGGCTGCGCGGCGCAAGCGCGGCGCTTGGGCTGAGCCAAAACTCGGAAACACAAGAGATCATTGCGGCATCGCTCTCG
GACTATCGGACCTTGGTTCAAGTCCTTTATGACGCGGGATATTTTGCGCCTGTCGTCAATATTCGTCTGGATGGGCGCGA
GGCTGCGGCGATCAACCTGCTGAACCCGCCAAAGCGCGTGCAGAACATTGCCATCACCGTCGATCCGGGCCCGGCCTTCA
CCTTTGGCCGTACCGTCGTCACCCCCCTGCCCGCGGGGGGGACCGCGTCCCTGCCCGAAGGCTTTGCGACCGGCAAACCC
GCCAACACCGGTGCCATTCAGGAGGCTGCAAACGCGGGCCTTGGCGCCTGGGATCGTGCCGGCCACCCGAAGGTAGAACT
TGCCGGTCAATCCATTACGGCCAATGCGGTCAAACGGCGCCTCGATGCCGAACTCAGGATCGCGCCGGGACCACGGCTGC
GCTTAGGCAACCTCAGAATTACAGGCGAATCCGACGTTCGACCTCAGGCGATCCAGCGGATCGCAGGCTTTGCCAAAGGG
CAAACCTATCATCCCGATCTCGTCTCAAAAGCCGCCAATCGCCTGCGCCGCACGGGGGCGTTCTCGACCGTTGCGCTGCG
ACAGGCCGACGTGCCGAACCCCGATGGCAGCCTCGATTTCATTGCCGAAGTCGAAGATCTGCCCAAGCGGCGTTTCACGT
TCGGGGTGGAGATTTCCTCGTCGCAGGCGATGGAACTCAGCACCAGCTGGATGCACCGGAACCTGTTTGGCGGCGCCGAG
CGATTGAAAATCGACTTTTCGGTGAGTGGCATCGGCAGCAGCGACATCAACAGCAGCATCACCGCGCGTCTGGACCGCCC
GGCTGCCCTGGGCACGGACCGGAACCTGTTCTACCTCGCCTCGATCGAGCAGTTGCGTGAAGAGCATTACACCGCCCGCA
GCGCCTTGGCAGCGGTCGGGGTGCGGCGCATCGTTTCCGACACCACCTTTGTCGAAGGCGCGCTCGGATTGCGCTACATC
AACGCGGACGACGCCTATGGCAGCAACCGCGAGTTCAAATATGTGGCCGCACGTCTGCGGGGCGAAAAGGACATGCGCAA
TATCAAGACCAACCCGACGGCTGGCTACTATCTCGACGGGGAAATCGTCCCCTTTGTGGGCGTATCGGGTGGCGATCCCG
GGGTGCAGATCAACATTGATGCCCGCGGTTACAAAGCGCTAGGCAACTCTGATCGTCTGGTCCTTGCAGGGCGTGTGCAG
CTTGGCTCGATCATCGGTCCAGACCCAAGCGATGTCTCTCCGACATTTCTGTATTTCTCGGGCGGTGCGGGCTCCGTGCG
CGGACAGGAGTTCCAATCCCTCGGGGTTGACACCCCCGGCGGCACAGCCGGTGGGCGCGCCTACCTTGCGCTTTCGGGCG
AGCTGCGCGGGCGGATCACAAATGCGATTTCGCTGGTGGGCTTTTACGACGTCGGCTTTGTCGACAAAGACAGTTTTATC
AGTGGCGACAGCGAATATCATGCGGGGGCCGGTATTGGTGTACGCTATGACGTCACCGGTGTTGGCCCGATCCGGCTCGA
CCTCGCGATGCCGGTGGCGGGCGACACCGAAGACGGGTTGCAGTTTTACATCGGCATAGGACAGGCGTTTTGA

Upstream 100 bases:

>100_bases
TATGTCACCGGCCATGCGTGTAGCCTCATTCATATGCCGTTGGCTTGTTTCTGCCAGCCACGGTTCTGCACCGCCCCGCC
TGCCCGCTGCCGGAGATTTC

Downstream 100 bases:

>100_bases
AACAGAACCTCCAGAGCCTCATCTTCACCTGTGGCCTCGCCACCTGCCCGGTCCTGACTCCCCTGCCCACCCTGGCACAA
GACGCGTCAGAATCTGGCGG

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 610; Mature: 610

Protein sequence:

>610_residues
MFRFCQLRRTAFPLCRTLRPLSLALSLSVALSASPLSALDANLAAPKAPDDLAERLRGASAALGLSQNSETQEIIAASLS
DYRTLVQVLYDAGYFAPVVNIRLDGREAAAINLLNPPKRVQNIAITVDPGPAFTFGRTVVTPLPAGGTASLPEGFATGKP
ANTGAIQEAANAGLGAWDRAGHPKVELAGQSITANAVKRRLDAELRIAPGPRLRLGNLRITGESDVRPQAIQRIAGFAKG
QTYHPDLVSKAANRLRRTGAFSTVALRQADVPNPDGSLDFIAEVEDLPKRRFTFGVEISSSQAMELSTSWMHRNLFGGAE
RLKIDFSVSGIGSSDINSSITARLDRPAALGTDRNLFYLASIEQLREEHYTARSALAAVGVRRIVSDTTFVEGALGLRYI
NADDAYGSNREFKYVAARLRGEKDMRNIKTNPTAGYYLDGEIVPFVGVSGGDPGVQINIDARGYKALGNSDRLVLAGRVQ
LGSIIGPDPSDVSPTFLYFSGGAGSVRGQEFQSLGVDTPGGTAGGRAYLALSGELRGRITNAISLVGFYDVGFVDKDSFI
SGDSEYHAGAGIGVRYDVTGVGPIRLDLAMPVAGDTEDGLQFYIGIGQAF

Sequences:

>Translated_610_residues
MFRFCQLRRTAFPLCRTLRPLSLALSLSVALSASPLSALDANLAAPKAPDDLAERLRGASAALGLSQNSETQEIIAASLS
DYRTLVQVLYDAGYFAPVVNIRLDGREAAAINLLNPPKRVQNIAITVDPGPAFTFGRTVVTPLPAGGTASLPEGFATGKP
ANTGAIQEAANAGLGAWDRAGHPKVELAGQSITANAVKRRLDAELRIAPGPRLRLGNLRITGESDVRPQAIQRIAGFAKG
QTYHPDLVSKAANRLRRTGAFSTVALRQADVPNPDGSLDFIAEVEDLPKRRFTFGVEISSSQAMELSTSWMHRNLFGGAE
RLKIDFSVSGIGSSDINSSITARLDRPAALGTDRNLFYLASIEQLREEHYTARSALAAVGVRRIVSDTTFVEGALGLRYI
NADDAYGSNREFKYVAARLRGEKDMRNIKTNPTAGYYLDGEIVPFVGVSGGDPGVQINIDARGYKALGNSDRLVLAGRVQ
LGSIIGPDPSDVSPTFLYFSGGAGSVRGQEFQSLGVDTPGGTAGGRAYLALSGELRGRITNAISLVGFYDVGFVDKDSFI
SGDSEYHAGAGIGVRYDVTGVGPIRLDLAMPVAGDTEDGLQFYIGIGQAF
>Mature_610_residues
MFRFCQLRRTAFPLCRTLRPLSLALSLSVALSASPLSALDANLAAPKAPDDLAERLRGASAALGLSQNSETQEIIAASLS
DYRTLVQVLYDAGYFAPVVNIRLDGREAAAINLLNPPKRVQNIAITVDPGPAFTFGRTVVTPLPAGGTASLPEGFATGKP
ANTGAIQEAANAGLGAWDRAGHPKVELAGQSITANAVKRRLDAELRIAPGPRLRLGNLRITGESDVRPQAIQRIAGFAKG
QTYHPDLVSKAANRLRRTGAFSTVALRQADVPNPDGSLDFIAEVEDLPKRRFTFGVEISSSQAMELSTSWMHRNLFGGAE
RLKIDFSVSGIGSSDINSSITARLDRPAALGTDRNLFYLASIEQLREEHYTARSALAAVGVRRIVSDTTFVEGALGLRYI
NADDAYGSNREFKYVAARLRGEKDMRNIKTNPTAGYYLDGEIVPFVGVSGGDPGVQINIDARGYKALGNSDRLVLAGRVQ
LGSIIGPDPSDVSPTFLYFSGGAGSVRGQEFQSLGVDTPGGTAGGRAYLALSGELRGRITNAISLVGFYDVGFVDKDSFI
SGDSEYHAGAGIGVRYDVTGVGPIRLDLAMPVAGDTEDGLQFYIGIGQAF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=140, Percent_Identity=35.7142857142857, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 64783; Mature: 64783

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRFCQLRRTAFPLCRTLRPLSLALSLSVALSASPLSALDANLAAPKAPDDLAERLRGAS
CCCHHHHHHHHHHHHHHCCHHHEEEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHCCCH
AALGLSQNSETQEIIAASLSDYRTLVQVLYDAGYFAPVVNIRLDGREAAAINLLNPPKRV
HEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCCHHH
QNIAITVDPGPAFTFGRTVVTPLPAGGTASLPEGFATGKPANTGAIQEAANAGLGAWDRA
CEEEEEECCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC
GHPKVELAGQSITANAVKRRLDAELRIAPGPRLRLGNLRITGESDVRPQAIQRIAGFAKG
CCCCEEECCCCEEHHHHHHHCCCCEEECCCCCEEECEEEEECCCCCCHHHHHHHHHHHCC
QTYHPDLVSKAANRLRRTGAFSTVALRQADVPNPDGSLDFIAEVEDLPKRRFTFGVEISS
CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEECC
SQAMELSTSWMHRNLFGGAERLKIDFSVSGIGSSDINSSITARLDRPAALGTDRNLFYLA
CCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEH
SIEQLREEHYTARSALAAVGVRRIVSDTTFVEGALGLRYINADDAYGSNREFKYVAARLR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCEEEEECCCCCCCCCCCHHHHHHHHC
GEKDMRNIKTNPTAGYYLDGEIVPFVGVSGGDPGVQINIDARGYKALGNSDRLVLAGRVQ
CCHHHHHCCCCCCCCEEECCEEEEEEEECCCCCCEEEEEECCCCEECCCCCCEEEEECEE
LGSIIGPDPSDVSPTFLYFSGGAGSVRGQEFQSLGVDTPGGTAGGRAYLALSGELRGRIT
ECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHH
NAISLVGFYDVGFVDKDSFISGDSEYHAGAGIGVRYDVTGVGPIRLDLAMPVAGDTEDGL
HHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCE
QFYIGIGQAF
EEEEEECCCC
>Mature Secondary Structure
MFRFCQLRRTAFPLCRTLRPLSLALSLSVALSASPLSALDANLAAPKAPDDLAERLRGAS
CCCHHHHHHHHHHHHHHCCHHHEEEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHCCCH
AALGLSQNSETQEIIAASLSDYRTLVQVLYDAGYFAPVVNIRLDGREAAAINLLNPPKRV
HEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCCHHH
QNIAITVDPGPAFTFGRTVVTPLPAGGTASLPEGFATGKPANTGAIQEAANAGLGAWDRA
CEEEEEECCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC
GHPKVELAGQSITANAVKRRLDAELRIAPGPRLRLGNLRITGESDVRPQAIQRIAGFAKG
CCCCEEECCCCEEHHHHHHHCCCCEEECCCCCEEECEEEEECCCCCCHHHHHHHHHHHCC
QTYHPDLVSKAANRLRRTGAFSTVALRQADVPNPDGSLDFIAEVEDLPKRRFTFGVEISS
CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEECC
SQAMELSTSWMHRNLFGGAERLKIDFSVSGIGSSDINSSITARLDRPAALGTDRNLFYLA
CCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEH
SIEQLREEHYTARSALAAVGVRRIVSDTTFVEGALGLRYINADDAYGSNREFKYVAARLR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCEEEEECCCCCCCCCCCHHHHHHHHC
GEKDMRNIKTNPTAGYYLDGEIVPFVGVSGGDPGVQINIDARGYKALGNSDRLVLAGRVQ
CCHHHHHCCCCCCCCEEECCEEEEEEEECCCCCCEEEEEECCCCEECCCCCCEEEEECEE
LGSIIGPDPSDVSPTFLYFSGGAGSVRGQEFQSLGVDTPGGTAGGRAYLALSGELRGRIT
ECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHH
NAISLVGFYDVGFVDKDSFISGDSEYHAGAGIGVRYDVTGVGPIRLDLAMPVAGDTEDGL
HHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCE
QFYIGIGQAF
EEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]