| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082230
Identifier: 99082230
GI number: 99082230
Start: 2511432
End: 2511881
Strand: Reverse
Name: 99082230
Synonym: TM1040_2390
Alternate gene names: NA
Gene position: 2511881-2511432 (Counterclockwise)
Preceding gene: 99082231
Following gene: 99082228
Centisome position: 78.47
GC content: 60.0
Gene sequence:
>450_bases ATGATTACAGCGATGCGCCCCTATGCGGGTGTGCCTTCAAACAATGTGACCCCCGTTGTGTTTACGGTCACCGACACGGT CGCTCTCTCTTCGAGCGACAGCGGTGCGACCGGTGCGGAATTTGCCAACAGCCGTCTGGGCAATTTCCTGAGTGATGACC CCGCGCCCAGAGACCGGGATCTCGACTCCCTCTTCAGCAGTGACACGCTGCCCGCTTACGAGAAATCTTCGTCGTCTTCT GCGTCTGCGAGCAGCATTGAGACGGAGGGACTGCTTTCGCCTCTGCCGCAGAGCTTTGACCCGATCAGCCTGCCGCCGCT GGAAAGCGCGCTGAGCAGCCAGATGCAGCAGGTCGCGCAGGACAACGTGTTCCGAGGGATCTCCTCGGGGAGCTTTGCAC AGGAGATGTACACGAACACCCAGGATGTGCTGTCTCGAGTTGCTGCCTGA
Upstream 100 bases:
>100_bases TCGCGCCCGGAGCAACTCTTTTCCGATATGCTAGGCGCGACGCCCGATCTGGCCCGATCCGGGGAGTCTCGACCCGACAC GCAGGTGGAAAGGAATTGAG
Downstream 100 bases:
>100_bases TCAGCGTGTGCCTCCACTGAACAAGAAACGCCCGAAGCTTTTGCTCCGGGCGTTTTTTCATGATCTGAGGTGCGTACGGG TGTCAGCCGCCCAGAGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 149; Mature: 149
Protein sequence:
>149_residues MITAMRPYAGVPSNNVTPVVFTVTDTVALSSSDSGATGAEFANSRLGNFLSDDPAPRDRDLDSLFSSDTLPAYEKSSSSS ASASSIETEGLLSPLPQSFDPISLPPLESALSSQMQQVAQDNVFRGISSGSFAQEMYTNTQDVLSRVAA
Sequences:
>Translated_149_residues MITAMRPYAGVPSNNVTPVVFTVTDTVALSSSDSGATGAEFANSRLGNFLSDDPAPRDRDLDSLFSSDTLPAYEKSSSSS ASASSIETEGLLSPLPQSFDPISLPPLESALSSQMQQVAQDNVFRGISSGSFAQEMYTNTQDVLSRVAA >Mature_149_residues MITAMRPYAGVPSNNVTPVVFTVTDTVALSSSDSGATGAEFANSRLGNFLSDDPAPRDRDLDSLFSSDTLPAYEKSSSSS ASASSIETEGLLSPLPQSFDPISLPPLESALSSQMQQVAQDNVFRGISSGSFAQEMYTNTQDVLSRVAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15648; Mature: 15648
Theoretical pI: Translated: 3.85; Mature: 3.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITAMRPYAGVPSNNVTPVVFTVTDTVALSSSDSGATGAEFANSRLGNFLSDDPAPRDRD CCCCCCCCCCCCCCCCCEEEEEEECEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC LDSLFSSDTLPAYEKSSSSSASASSIETEGLLSPLPQSFDPISLPPLESALSSQMQQVAQ HHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH DNVFRGISSGSFAQEMYTNTQDVLSRVAA HHHHHCCCCCHHHHHHHCCHHHHHHHHCC >Mature Secondary Structure MITAMRPYAGVPSNNVTPVVFTVTDTVALSSSDSGATGAEFANSRLGNFLSDDPAPRDRD CCCCCCCCCCCCCCCCCEEEEEEECEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC LDSLFSSDTLPAYEKSSSSSASASSIETEGLLSPLPQSFDPISLPPLESALSSQMQQVAQ HHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH DNVFRGISSGSFAQEMYTNTQDVLSRVAA HHHHHCCCCCHHHHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA