| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082217
Identifier: 99082217
GI number: 99082217
Start: 2496237
End: 2497472
Strand: Reverse
Name: 99082217
Synonym: TM1040_2377
Alternate gene names: NA
Gene position: 2497472-2496237 (Counterclockwise)
Preceding gene: 99082218
Following gene: 99082216
Centisome position: 78.02
GC content: 58.66
Gene sequence:
>1236_bases ATGTTTACGCCCATCTCTCTTGCGCAGGGCCGCACGCTGCCGTTCTGGCGCCGCCCCATCACGCTTTTGTTCCTCATGGC GATCGCCATGCCCGTCGCATTTAATACGTGGTCGGCACTGCTCAATAACTTTGTGATTGAGGTGGCTAATTTCGACGGCG CGGATATTGGCGTCCTGCACACGATGCGCGAGATTCCGGGGTTTTTGGCGTTTCTTGTGATCTTTCTGATCATCTTTATC CGCGAGCAGGTTCTGGGGCTTTTGTCTCTGGCGCTCTTGGGAGCGGCCACGGCAGTCACAGCGTGGTTCCCCACGCTTCA GGGGATCCTGATGATTACGGTCCTCAGTTCCATCGGCTTTCACTATTACGAGACGGTGGCGCAATCGCTGCAGTTGCAGT GGCTCTCTAAGGAGCGCGCGCCGCAGATGCTGGGCTGGCTTGTGGCCACGGGATCGGCAGCGACGCTTGTGGTCTATGGT GCCATCGTGGTCCTCTGGGAGCCAATGAACCTCTCTTATAATGTGGTCTACCTGGCTGCAGGCGGCTTTACGGTCCTGAT TGCACTCTATTGCCTCTTTGCGGTGCCTCAGTTTGACGGCCCGACGCCGCAAAACAAGAAGATGGTGCTGCGGCGGCGCT ACTGGCTCTATTATGCGCTGCAGTTCATGGCTGGGGCGCGGCGTCAGATCTTCGTGGTCTTTGCGGGCTTCATGATGGTA GAGCGCTTTGGCTTTGAGGTGCATCACCTGACCGGGCTCTATCTCATCAACCTCTTGGTCAACATGGTGGCGGCGCCATT TCTCGGGCGCTTTGTCGCCCGGTTTGGCGAGCGGCGCACGTTGATCTTTGAATACGCAGGTCTGGCCACTGTCTTTGCCC TTTATGGCGGGATCTATTGGTTCGGCTGGGGCGTGATGCTGGCGGCAGCGCTTTATGTGGTGGATCACATCCTCTTTGCC CTCGCCCTCGCACTCAAGACCTATTTCCAGAAGATCGCAGACCCCGCCGATATTGCCCCCACGGCCGCTGTTGCGTTTAC GATCAACCACATCGCAGCGGTGTTCTTGCCGGTGATGCTGGGCCTTTTGTGGGTGGCCTCCCCGGCGGCGGTCTTTGGCT TGGCAGCGATGATGGCGCTGGTGTCGCTCTTGTTGTCGCTGATGATTCCGCGCCACCCCGAGCCCGGGAATGAGACCATC TTTGCGCAGTTCGCGGCCCCGACACCTGCGGAATAA
Upstream 100 bases:
>100_bases TGTCACACAGTCGTAGCGCGCAGAAATGCAGAGGCGTCTGTGCGTGGCTTGGTACAATTCTTTTCTCGCCCACGCACAAA AAGCGCACTAAAGCCAAGCC
Downstream 100 bases:
>100_bases GGACCGCTGGAGGGCGGCGCGGCTCTGCTCACCCCTTGACCAATCACACAAGGCTCGCGTAGGCGCTGATCAACCGCGCG CGACGCGCTCTATGTTTCGT
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Transporter Facilitator Family; Transporter MFS Superfamily; Permease Facilitator Superfamily; Permease Of Facilitator Superfamily; Facilitator Superfamily Permease; MFS Protein Permease Component; Multidrug-Efflux Transporter MFS Family; Facilitator Family Transporter
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MFTPISLAQGRTLPFWRRPITLLFLMAIAMPVAFNTWSALLNNFVIEVANFDGADIGVLHTMREIPGFLAFLVIFLIIFI REQVLGLLSLALLGAATAVTAWFPTLQGILMITVLSSIGFHYYETVAQSLQLQWLSKERAPQMLGWLVATGSAATLVVYG AIVVLWEPMNLSYNVVYLAAGGFTVLIALYCLFAVPQFDGPTPQNKKMVLRRRYWLYYALQFMAGARRQIFVVFAGFMMV ERFGFEVHHLTGLYLINLLVNMVAAPFLGRFVARFGERRTLIFEYAGLATVFALYGGIYWFGWGVMLAAALYVVDHILFA LALALKTYFQKIADPADIAPTAAVAFTINHIAAVFLPVMLGLLWVASPAAVFGLAAMMALVSLLLSLMIPRHPEPGNETI FAQFAAPTPAE
Sequences:
>Translated_411_residues MFTPISLAQGRTLPFWRRPITLLFLMAIAMPVAFNTWSALLNNFVIEVANFDGADIGVLHTMREIPGFLAFLVIFLIIFI REQVLGLLSLALLGAATAVTAWFPTLQGILMITVLSSIGFHYYETVAQSLQLQWLSKERAPQMLGWLVATGSAATLVVYG AIVVLWEPMNLSYNVVYLAAGGFTVLIALYCLFAVPQFDGPTPQNKKMVLRRRYWLYYALQFMAGARRQIFVVFAGFMMV ERFGFEVHHLTGLYLINLLVNMVAAPFLGRFVARFGERRTLIFEYAGLATVFALYGGIYWFGWGVMLAAALYVVDHILFA LALALKTYFQKIADPADIAPTAAVAFTINHIAAVFLPVMLGLLWVASPAAVFGLAAMMALVSLLLSLMIPRHPEPGNETI FAQFAAPTPAE >Mature_411_residues MFTPISLAQGRTLPFWRRPITLLFLMAIAMPVAFNTWSALLNNFVIEVANFDGADIGVLHTMREIPGFLAFLVIFLIIFI REQVLGLLSLALLGAATAVTAWFPTLQGILMITVLSSIGFHYYETVAQSLQLQWLSKERAPQMLGWLVATGSAATLVVYG AIVVLWEPMNLSYNVVYLAAGGFTVLIALYCLFAVPQFDGPTPQNKKMVLRRRYWLYYALQFMAGARRQIFVVFAGFMMV ERFGFEVHHLTGLYLINLLVNMVAAPFLGRFVARFGERRTLIFEYAGLATVFALYGGIYWFGWGVMLAAALYVVDHILFA LALALKTYFQKIADPADIAPTAAVAFTINHIAAVFLPVMLGLLWVASPAAVFGLAAMMALVSLLLSLMIPRHPEPGNETI FAQFAAPTPAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45470; Mature: 45470
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTPISLAQGRTLPFWRRPITLLFLMAIAMPVAFNTWSALLNNFVIEVANFDGADIGVLH CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHH TMREIPGFLAFLVIFLIIFIREQVLGLLSLALLGAATAVTAWFPTLQGILMITVLSSIGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HYYETVAQSLQLQWLSKERAPQMLGWLVATGSAATLVVYGAIVVLWEPMNLSYNVVYLAA HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCEEEEEEEC GGFTVLIALYCLFAVPQFDGPTPQNKKMVLRRRYWLYYALQFMAGARRQIFVVFAGFMMV CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ERFGFEVHHLTGLYLINLLVNMVAAPFLGRFVARFGERRTLIFEYAGLATVFALYGGIYW HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH FGWGVMLAAALYVVDHILFALALALKTYFQKIADPADIAPTAAVAFTINHIAAVFLPVML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH GLLWVASPAAVFGLAAMMALVSLLLSLMIPRHPEPGNETIFAQFAAPTPAE HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC >Mature Secondary Structure MFTPISLAQGRTLPFWRRPITLLFLMAIAMPVAFNTWSALLNNFVIEVANFDGADIGVLH CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHH TMREIPGFLAFLVIFLIIFIREQVLGLLSLALLGAATAVTAWFPTLQGILMITVLSSIGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HYYETVAQSLQLQWLSKERAPQMLGWLVATGSAATLVVYGAIVVLWEPMNLSYNVVYLAA HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCEEEEEEEC GGFTVLIALYCLFAVPQFDGPTPQNKKMVLRRRYWLYYALQFMAGARRQIFVVFAGFMMV CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ERFGFEVHHLTGLYLINLLVNMVAAPFLGRFVARFGERRTLIFEYAGLATVFALYGGIYW HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH FGWGVMLAAALYVVDHILFALALALKTYFQKIADPADIAPTAAVAFTINHIAAVFLPVML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH GLLWVASPAAVFGLAAMMALVSLLLSLMIPRHPEPGNETIFAQFAAPTPAE HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA