Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082193

Identifier: 99082193

GI number: 99082193

Start: 2474374

End: 2475225

Strand: Direct

Name: 99082193

Synonym: TM1040_2353

Alternate gene names: NA

Gene position: 2474374-2475225 (Clockwise)

Preceding gene: 99082192

Following gene: 99082194

Centisome position: 77.3

GC content: 61.15

Gene sequence:

>852_bases
ATGCGCCACATGGGTCTATTGGCCGCAGGGCTGATTGGGGCGCTGTCCCTGACAGCGTGCAGCAAGGAAATTGATAAAGA
AGCCGTCGACCGCGCGCTTCAGGACGTCAATGTCGTTGATGAAAGCAACCTCAACAGTGTCGTGCTCAACAGTGCCGACC
CCAATGAGGCCGTCTCGTACTTTCAGCGCAGTGTGAAACAGTCACCGGATCGGATTGATCTGAACCGTGGACTGGCAAGC
TCGCTTATTCGGGCCAAGCGCTATACCGAAGCAGCTGCCGCATGGCAGCGCGTGGTCGATCTGCCCGAGGCCCAAAGCGC
CGACAGCGTCGAGCTCGCCGATGCCCTCATCCGCAACAACGAGTGGGATAAGGCGCGTCAGGTGCTTGATACCGTGCCGC
CCACCCATGAGACCTTCAAACGCTACCGCCTCGAGGCCATGGTCGCGGATTCGGAACAAAACTGGAAGGCCTCTGACAGC
TTTTACGAGACAGCCGTGGGCCTGACGACGAAACCGGCAGGCGTGTTCAACAACTGGGGCTATTCCAAGCTCACCCGCGG
AGACTTCAGCGGGGCCGAGCGTCTCTTTGGCGAGGCGCTGCGTCAGGACCCAAGCCTCTTCACCGCCAAGAACAACCTCG
TTCTGGCCCGCGGCGCGCAACGCAACTACAGCCTGCCCGTGATCGCAATGACCCAGACCGAGCGTGCGCAGCTCTTGCAT
ACGATGGCGCTCTCTGCGGTGAAACAGGGCGATGTCAGCACGGGTGAAGGCCTCCTGCGGGAAGCCATCGAGACCCACCC
GCAGCATTTTGATGCTGCCGCCCGCGCGCTGGAAGCGCTCGAAAACGGCTGA

Upstream 100 bases:

>100_bases
CACAGGCGATCAAGATAAACTGGTGCGAAAAGGCGGGGGCGTGTTCCTCATCGAAACGACACCGTAGCGCCAGAGGCAGA
GCAGAAAAGGACGCAGCAAA

Downstream 100 bases:

>100_bases
TCGGAGCCGCGACAGATGCATTTCCCGCCCGAGGCCGCCCTGTGGTTCCTGCCCTTCGTTGTGCCGCTGTGCTATGTGGT
GGCGCTGAACGATCTGCGCA

Product: tetratricopeptide region

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSYFQRSVKQSPDRIDLNRGLAS
SLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNNEWDKARQVLDTVPPTHETFKRYRLEAMVADSEQNWKASDS
FYETAVGLTTKPAGVFNNWGYSKLTRGDFSGAERLFGEALRQDPSLFTAKNNLVLARGAQRNYSLPVIAMTQTERAQLLH
TMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEALENG

Sequences:

>Translated_283_residues
MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSYFQRSVKQSPDRIDLNRGLAS
SLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNNEWDKARQVLDTVPPTHETFKRYRLEAMVADSEQNWKASDS
FYETAVGLTTKPAGVFNNWGYSKLTRGDFSGAERLFGEALRQDPSLFTAKNNLVLARGAQRNYSLPVIAMTQTERAQLLH
TMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEALENG
>Mature_283_residues
MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSYFQRSVKQSPDRIDLNRGLAS
SLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNNEWDKARQVLDTVPPTHETFKRYRLEAMVADSEQNWKASDS
FYETAVGLTTKPAGVFNNWGYSKLTRGDFSGAERLFGEALRQDPSLFTAKNNLVLARGAQRNYSLPVIAMTQTERAQLLH
TMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEALENG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31059; Mature: 31059

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH
FQRSVKQSPDRIDLNRGLASSLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNN
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
EWDKARQVLDTVPPTHETFKRYRLEAMVADSEQNWKASDSFYETAVGLTTKPAGVFNNWG
CHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
YSKLTRGDFSGAERLFGEALRQDPSLFTAKNNLVLARGAQRNYSLPVIAMTQTERAQLLH
CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCEEEECCHHHHHHHH
TMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEALENG
HHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH
FQRSVKQSPDRIDLNRGLASSLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNN
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
EWDKARQVLDTVPPTHETFKRYRLEAMVADSEQNWKASDSFYETAVGLTTKPAGVFNNWG
CHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
YSKLTRGDFSGAERLFGEALRQDPSLFTAKNNLVLARGAQRNYSLPVIAMTQTERAQLLH
CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCEEEECCHHHHHHHH
TMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEALENG
HHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA