| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082193
Identifier: 99082193
GI number: 99082193
Start: 2474374
End: 2475225
Strand: Direct
Name: 99082193
Synonym: TM1040_2353
Alternate gene names: NA
Gene position: 2474374-2475225 (Clockwise)
Preceding gene: 99082192
Following gene: 99082194
Centisome position: 77.3
GC content: 61.15
Gene sequence:
>852_bases ATGCGCCACATGGGTCTATTGGCCGCAGGGCTGATTGGGGCGCTGTCCCTGACAGCGTGCAGCAAGGAAATTGATAAAGA AGCCGTCGACCGCGCGCTTCAGGACGTCAATGTCGTTGATGAAAGCAACCTCAACAGTGTCGTGCTCAACAGTGCCGACC CCAATGAGGCCGTCTCGTACTTTCAGCGCAGTGTGAAACAGTCACCGGATCGGATTGATCTGAACCGTGGACTGGCAAGC TCGCTTATTCGGGCCAAGCGCTATACCGAAGCAGCTGCCGCATGGCAGCGCGTGGTCGATCTGCCCGAGGCCCAAAGCGC CGACAGCGTCGAGCTCGCCGATGCCCTCATCCGCAACAACGAGTGGGATAAGGCGCGTCAGGTGCTTGATACCGTGCCGC CCACCCATGAGACCTTCAAACGCTACCGCCTCGAGGCCATGGTCGCGGATTCGGAACAAAACTGGAAGGCCTCTGACAGC TTTTACGAGACAGCCGTGGGCCTGACGACGAAACCGGCAGGCGTGTTCAACAACTGGGGCTATTCCAAGCTCACCCGCGG AGACTTCAGCGGGGCCGAGCGTCTCTTTGGCGAGGCGCTGCGTCAGGACCCAAGCCTCTTCACCGCCAAGAACAACCTCG TTCTGGCCCGCGGCGCGCAACGCAACTACAGCCTGCCCGTGATCGCAATGACCCAGACCGAGCGTGCGCAGCTCTTGCAT ACGATGGCGCTCTCTGCGGTGAAACAGGGCGATGTCAGCACGGGTGAAGGCCTCCTGCGGGAAGCCATCGAGACCCACCC GCAGCATTTTGATGCTGCCGCCCGCGCGCTGGAAGCGCTCGAAAACGGCTGA
Upstream 100 bases:
>100_bases CACAGGCGATCAAGATAAACTGGTGCGAAAAGGCGGGGGCGTGTTCCTCATCGAAACGACACCGTAGCGCCAGAGGCAGA GCAGAAAAGGACGCAGCAAA
Downstream 100 bases:
>100_bases TCGGAGCCGCGACAGATGCATTTCCCGCCCGAGGCCGCCCTGTGGTTCCTGCCCTTCGTTGTGCCGCTGTGCTATGTGGT GGCGCTGAACGATCTGCGCA
Product: tetratricopeptide region
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 283; Mature: 283
Protein sequence:
>283_residues MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSYFQRSVKQSPDRIDLNRGLAS SLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNNEWDKARQVLDTVPPTHETFKRYRLEAMVADSEQNWKASDS FYETAVGLTTKPAGVFNNWGYSKLTRGDFSGAERLFGEALRQDPSLFTAKNNLVLARGAQRNYSLPVIAMTQTERAQLLH TMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEALENG
Sequences:
>Translated_283_residues MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSYFQRSVKQSPDRIDLNRGLAS SLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNNEWDKARQVLDTVPPTHETFKRYRLEAMVADSEQNWKASDS FYETAVGLTTKPAGVFNNWGYSKLTRGDFSGAERLFGEALRQDPSLFTAKNNLVLARGAQRNYSLPVIAMTQTERAQLLH TMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEALENG >Mature_283_residues MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSYFQRSVKQSPDRIDLNRGLAS SLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNNEWDKARQVLDTVPPTHETFKRYRLEAMVADSEQNWKASDS FYETAVGLTTKPAGVFNNWGYSKLTRGDFSGAERLFGEALRQDPSLFTAKNNLVLARGAQRNYSLPVIAMTQTERAQLLH TMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEALENG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31059; Mature: 31059
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH FQRSVKQSPDRIDLNRGLASSLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNN HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC EWDKARQVLDTVPPTHETFKRYRLEAMVADSEQNWKASDSFYETAVGLTTKPAGVFNNWG CHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC YSKLTRGDFSGAERLFGEALRQDPSLFTAKNNLVLARGAQRNYSLPVIAMTQTERAQLLH CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCEEEECCHHHHHHHH TMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEALENG HHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH FQRSVKQSPDRIDLNRGLASSLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNN HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC EWDKARQVLDTVPPTHETFKRYRLEAMVADSEQNWKASDSFYETAVGLTTKPAGVFNNWG CHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC YSKLTRGDFSGAERLFGEALRQDPSLFTAKNNLVLARGAQRNYSLPVIAMTQTERAQLLH CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCEEEECCHHHHHHHH TMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEALENG HHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA