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The map label for this gene is hofQ [C]

Identifier: 99082186

GI number: 99082186

Start: 2466653

End: 2468146

Strand: Direct

Name: hofQ [C]

Synonym: TM1040_2346

Alternate gene names: 99082186

Gene position: 2466653-2468146 (Clockwise)

Preceding gene: 99082185

Following gene: 99082187

Centisome position: 77.06

GC content: 59.37

Gene sequence:

>1494_bases
ATGAAACACGAAGTCGCGCACATTAGCCGCAAAATCGGGGCGCAAAGACCCCACATCAGAGGCGTGATCGGAAAGGCAGG
TCACATGTCAATTAGACGGTATTGTGCGGCGGCCCTCACGGGGCTGGCCCTCCTATTTGCTCATTCTCCCTCGCCCGCAG
TGGCGCAGGGGATCAGCGTATTGAAAAAGGGCACCAACGCGGTTCTCGATGTGCCGATGAACCGGGCCGTGGTGGTCGAA
GCCGATGTGCCCTTTGCGGAACTCAGCATCGCCAATCCCAGCATTGCGGATATTTCCTCACTGTCGGATCGCACGATCTA
TGTGCTGGGCAAATCGCCCGGCCTGACGACGCTGACGCTGCTGGACGGCTCTGGCGGGCTGATCACCAACGTGGATGTGC
GCGTCGCTGCGGATGTGAGCGAGTTCAAACAGCGCCTGCAGCAGATCCTGCCCAATGAAAAGATCGAAGTGCGCACCGCC
AATGATGGCATTGTTCTCTCTGGCACCGTTTCCAGTGCCCAACGCCTGCAGCGCGCGCTGGATCTGGCAGAACGCTATGC
TCCGGATCGCGTCAGCAACCTGATGACCGTGGGCGGTATTCAGCAAGTGATGCTGAAGGTCCGCTTTGCCGAAATGGAGC
GCTCCGTCAGTAAGTCGCTGGGTGGCTCCATGCTGATCAGATCTTCGGATGGCGCGATTGCCACCGGCTCCTTCCAGAAC
CGTGGCGGCAACGGAAATATCTTTGGCGACAGTGTCACAAGCCCCGTTCAGCTCCAGAGCGAGACCCTTGGCGCAGCCCT
GTTCGGTTTCGACATTGGCGCGGTGCAGTTCAACGTGCTCCTGGAAGCACTCGAGCAAAAAGGTCTGGTACGCACCCTGG
CGGAGCCGAACCTCTCGGCCCTTTCGGGTCAAGAAGCCAATTTCCTCGCCGGTGGTGAATATCCGGTCCCCGTTGCGCAA
GAAGATGGCGTGATCACGGTTGAGTTCAAACCCTTCGGGATTGAGCTGAACTTCATCCCGCGCGTGGTTGATGGCGATCT
GATCAATCTGGAGCTCAAGGCTGCAGTCTCGGCGATCGACACCACCAATTCCGCGACCTTTGACGGGTTCTCCATCAACG
CCTTCTCGCGCCGCGAAACCGCAACGACGGTAGAGCTGCGCGATGGTGAGAGCTTTGCGATTGCCGGTCTCATTGAGGAC
GAGTTCCGCGACGGGGCCGCACAGGTGCCTTGGCTTGGCGATGTGCCGGTTCTGGGCGCCCTCTTCCGCAGTGCAGATTA
CGCCCGCAACCAGAGCGAATTGGTTATCATCGTCTCGGCTCATCTGGTGACCCCGACCCGCGGCGAAGCGCTGGCGCTGC
CAACAGATCGCATTCGCCCCCCGAGCGAGAAGAATCTGTTCTTGTTCGGACAGACCGAACGCGCACAGGCCGGGGCTGCA
GGCGAAGTTGCAAATCAGGACTTCAACGGCTCTTATGGCTATCTACTTGATTGA

Upstream 100 bases:

>100_bases
CGGGCCCGCGGATCAATCTGATCCTGCGGGCCTCCTCTATTGTGGCTCTGCCCCCTCAGCTTTCTCTTTAATAAACGCCT
CGAAGTCATTGATTCTTGCA

Downstream 100 bases:

>100_bases
TCCAGACAAACGGTGGCGCAGATGTTGAAATATGCAGCAATTTTGGGATTGGCCTTGGCGACCGGGGCCTGCGCCTACAA
AGAGGCGGGCGAGCCCCTTG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MKHEVAHISRKIGAQRPHIRGVIGKAGHMSIRRYCAAALTGLALLFAHSPSPAVAQGISVLKKGTNAVLDVPMNRAVVVE
ADVPFAELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTA
NDGIVLSGTVSSAQRLQRALDLAERYAPDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSMLIRSSDGAIATGSFQN
RGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQFNVLLEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVPVAQ
EDGVITVEFKPFGIELNFIPRVVDGDLINLELKAAVSAIDTTNSATFDGFSINAFSRRETATTVELRDGESFAIAGLIED
EFRDGAAQVPWLGDVPVLGALFRSADYARNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNLFLFGQTERAQAGAA
GEVANQDFNGSYGYLLD

Sequences:

>Translated_497_residues
MKHEVAHISRKIGAQRPHIRGVIGKAGHMSIRRYCAAALTGLALLFAHSPSPAVAQGISVLKKGTNAVLDVPMNRAVVVE
ADVPFAELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTA
NDGIVLSGTVSSAQRLQRALDLAERYAPDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSMLIRSSDGAIATGSFQN
RGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQFNVLLEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVPVAQ
EDGVITVEFKPFGIELNFIPRVVDGDLINLELKAAVSAIDTTNSATFDGFSINAFSRRETATTVELRDGESFAIAGLIED
EFRDGAAQVPWLGDVPVLGALFRSADYARNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNLFLFGQTERAQAGAA
GEVANQDFNGSYGYLLD
>Mature_497_residues
MKHEVAHISRKIGAQRPHIRGVIGKAGHMSIRRYCAAALTGLALLFAHSPSPAVAQGISVLKKGTNAVLDVPMNRAVVVE
ADVPFAELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTA
NDGIVLSGTVSSAQRLQRALDLAERYAPDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSMLIRSSDGAIATGSFQN
RGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQFNVLLEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVPVAQ
EDGVITVEFKPFGIELNFIPRVVDGDLINLELKAAVSAIDTTNSATFDGFSINAFSRRETATTVELRDGESFAIAGLIED
EFRDGAAQVPWLGDVPVLGALFRSADYARNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNLFLFGQTERAQAGAA
GEVANQDFNGSYGYLLD

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=198, Percent_Identity=32.3232323232323, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87082242, Length=186, Percent_Identity=30.1075268817204, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 52843; Mature: 52843

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHEVAHISRKIGAQRPHIRGVIGKAGHMSIRRYCAAALTGLALLFAHSPSPAVAQGISV
CCCHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH
LKKGTNAVLDVPMNRAVVVEADVPFAELSIANPSIADISSLSDRTIYVLGKSPGLTTLTL
HHCCCCEEEECCCCCEEEEECCCCEEEEEECCCCHHHHHCCCCCEEEEEECCCCCEEEEE
LDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQRAL
EECCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCEEEECCHHHHHHHHHHH
DLAERYAPDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSMLIRSSDGAIATGSFQN
HHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCC
RGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQFNVLLEALEQKGLVRTLAEPNLSA
CCCCCCEECCCCCCCEEECHHHHCEEEEECCHHHHHHHHHHHHHHHCCHHHHHCCCCCHH
LSGQEANFLAGGEYPVPVAQEDGVITVEFKPFGIELNFIPRVVDGDLINLELKAAVSAID
CCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEEEEEECCEECCCCEEEEEHHHHHHHHC
TTNSATFDGFSINAFSRRETATTVELRDGESFAIAGLIEDEFRDGAAQVPWLGDVPVLGA
CCCCCEECCEEEECCCCCCCEEEEEEECCCEEEEEEEEHHHHCCCCCCCCCCCCHHHHHH
LFRSADYARNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNLFLFGQTERAQAGAA
HHHHHHHCCCCCCEEEEEEEEEECCCCCCEEECCHHCCCCCCCCCEEEEECCCCCCCCCC
GEVANQDFNGSYGYLLD
CCCCCCCCCCCCCCEEC
>Mature Secondary Structure
MKHEVAHISRKIGAQRPHIRGVIGKAGHMSIRRYCAAALTGLALLFAHSPSPAVAQGISV
CCCHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH
LKKGTNAVLDVPMNRAVVVEADVPFAELSIANPSIADISSLSDRTIYVLGKSPGLTTLTL
HHCCCCEEEECCCCCEEEEECCCCEEEEEECCCCHHHHHCCCCCEEEEEECCCCCEEEEE
LDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQRAL
EECCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCEEEECCHHHHHHHHHHH
DLAERYAPDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSMLIRSSDGAIATGSFQN
HHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCC
RGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQFNVLLEALEQKGLVRTLAEPNLSA
CCCCCCEECCCCCCCEEECHHHHCEEEEECCHHHHHHHHHHHHHHHCCHHHHHCCCCCHH
LSGQEANFLAGGEYPVPVAQEDGVITVEFKPFGIELNFIPRVVDGDLINLELKAAVSAID
CCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEEEEEECCEECCCCEEEEEHHHHHHHHC
TTNSATFDGFSINAFSRRETATTVELRDGESFAIAGLIEDEFRDGAAQVPWLGDVPVLGA
CCCCCEECCEEEECCCCCCCEEEEEEECCCEEEEEEEEHHHHCCCCCCCCCCCCHHHHHH
LFRSADYARNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNLFLFGQTERAQAGAA
HHHHHHHCCCCCCEEEEEEEEEECCCCCCEEECCHHCCCCCCCCCEEEEECCCCCCCCCC
GEVANQDFNGSYGYLLD
CCCCCCCCCCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]