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The map label for this gene is cyoD [H]

Identifier: 99082127

GI number: 99082127

Start: 2407323

End: 2407670

Strand: Direct

Name: cyoD [H]

Synonym: TM1040_2287

Alternate gene names: 99082127

Gene position: 2407323-2407670 (Clockwise)

Preceding gene: 99082126

Following gene: 99082128

Centisome position: 75.21

GC content: 56.03

Gene sequence:

>348_bases
ATGAGCGCCCATTCACACGGCTCTTACAAATCCTACGCGATCGGCTTTGTGTTGTCGGTCATCCTGACCGTGATCCCCTT
CTGGCTGGTTCTGGGAGAGGTGGACATCGGCGTCAACACGGCAATTGCCGTCATCTTTGGTCTCGGTGCGGTGCAGATCA
TCGTCCACATGCATTACTTTCTGCATGTGACCTATGGGGCCGAGGATGGCTGGCAGGTGATGTCGCTGGTGTTCACGGGG
ATCTTGCTGATCATCGTGCTGGCCGGGTCGATCTGGGTGATGGCGCATCTGCATGAAAACATGATGCCCGCACATGAACA
GATCGAACGGGTCAGGAACCTGCCATGA

Upstream 100 bases:

>100_bases
CCAATACGCGTCGCATCCTCTGCCTCAGCATGTTCTGGCACTTCCTTGATCTGATCTGGATCGGGGTCTTCTCATTCGTC
TATCTCACGGGGGTACTGCT

Downstream 100 bases:

>100_bases
GCACAGGTACAAGCACGGAGGGCGGCGGCAGACGCCGCCCTTTCTGGGTCGATGCGGTGATCCTCGCGCTGGCCTTTGGG
GTCTTTGTCACCATGGTGAG

Product: cytochrome C oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSAHSHGSYKSYAIGFVLSVILTVIPFWLVLGEVDIGVNTAIAVIFGLGAVQIIVHMHYFLHVTYGAEDGWQVMSLVFTG
ILLIIVLAGSIWVMAHLHENMMPAHEQIERVRNLP

Sequences:

>Translated_115_residues
MSAHSHGSYKSYAIGFVLSVILTVIPFWLVLGEVDIGVNTAIAVIFGLGAVQIIVHMHYFLHVTYGAEDGWQVMSLVFTG
ILLIIVLAGSIWVMAHLHENMMPAHEQIERVRNLP
>Mature_114_residues
SAHSHGSYKSYAIGFVLSVILTVIPFWLVLGEVDIGVNTAIAVIFGLGAVQIIVHMHYFLHVTYGAEDGWQVMSLVFTGI
LLIIVLAGSIWVMAHLHENMMPAHEQIERVRNLP

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=102, Percent_Identity=44.1176470588235, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 12724; Mature: 12593

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAHSHGSYKSYAIGFVLSVILTVIPFWLVLGEVDIGVNTAIAVIFGLGAVQIIVHMHYF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LHVTYGAEDGWQVMSLVFTGILLIIVLAGSIWVMAHLHENMMPAHEQIERVRNLP
HHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SAHSHGSYKSYAIGFVLSVILTVIPFWLVLGEVDIGVNTAIAVIFGLGAVQIIVHMHYF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LHVTYGAEDGWQVMSLVFTGILLIIVLAGSIWVMAHLHENMMPAHEQIERVRNLP
HHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]