| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is bclA [H]
Identifier: 99082078
GI number: 99082078
Start: 2351314
End: 2352930
Strand: Reverse
Name: bclA [H]
Synonym: TM1040_2238
Alternate gene names: 99082078
Gene position: 2352930-2351314 (Counterclockwise)
Preceding gene: 99082079
Following gene: 99082077
Centisome position: 73.51
GC content: 60.73
Gene sequence:
>1617_bases ATGATGACGCTCGGAGCATCCGCACATACCGATACATTCACCCGCGACGCCTTGCCGCCTGCGGATCAGTGGCCCGATTT TATGCTTGAGGGGTTTGAGTATCCCGAGCATCTGAACGCGGGCGTCGAACTGACCGATGCGATGGTGGAGCGCGGCTTTG GCGACCGTACTGCACTGATCGGCAACGGGCGGCAGCGCACCTATAAGGAGTTGGCCGACTGGACCAACCGGCTGGCGCAT GCGCTGGTTCAGGATCTGGGCGTCAAACCGGGCAATCGCATCCTGATCCGTTCTGCGAATAATCCGGCGATGGTGGCCTG CTGGCTCGCCGCCACCAAGGCGGGCGCGGTGGTGGTCAACACCATGCCGATGCTGCGCGCTGCAGAGCTAAAAAAATATG TCGAGAAGGCGCAGATCCAGTTTGCGCTCTGTGATACGCGGCTGATGGAGGAGATGGAGGCCTGCGCGGCCCAGTGCGAT GTGCTTGAGCGTGTCGTGGGCTTTGATGGGACCTCCAACCACGACGCTGAACTTGACCGGCTGGCACTGGAGAAACCGGT GCAGTTTGAGGCGGTAGAGACCGGACGCGATGATGTGGCGCTCCTGGGGTTCACCTCCGGGTCGACCGGAGAGCCCAAGG CCACCATGCATTTTCACCGCGATCTATTGATCATTGCCGATGGCTATGCCCGTGATGTGCTCAATGTGGTGCCGGAGGAC ATTTTTGTGGGATCTCCGCCACTTGCCTTTACCTTCGGGCTTGGCGGGCTAGCGATTTTCCCGTTACGGTTCGGGGCAAC CGCGACGCTTTTGGAACAGGCCACACCGCCCAATATGATCGAGATCATCGAGAAATACCGCGCGACCGTGTGCTTTACTG CGCCGACCGCCTATCGCGTGATGCTCTCGGCGATGGAAGAGGGCGCGGATCTGAGCAGCCTGCGCGCCGCTGTCTCTGCG GGCGAGACCCTGCCCAAACCTGTCTATGACGATTGGATGGCCAAGACCGGCAAGCCGATGCTCGATGGGATCGGCGCGAC CGAGATGCTGCATATCTTTATCTCCAACCGGTTTGACGACCACCGTCCTGCCTGCACCGGCAAACCTGTGCGCGGCTACG AGGCCAAGGTGGTCGATGACGAAGGCAACACTGTGCCCGATGGTGAAGTTGGCCGCCTTGCGGTGCGCGGGCCGACGGGC TGTCGCTACCTTAATGATGATCGGCAGGCGGGCTATGTCGCGGATGGTTGGAACATCACCGGCGACAGTTTCATCCGCGA TGCGGACGGCTATTTCCATTTTGCTGCGCGCAACGACGATATGATCGTCTCGGCGGGCTACAATATCGCTGGCCCCGAGG TGGAAGCTGCGCTTCTGGCGCATGCGGCGGTGGCGGAATGTGCGGTCATTGGCGCCCCGGACGAGGCGCGCGGACATATC GTGCAGGCGCATATCGTGCTCAACGCGGACTTCGCGCCGTCTGAGACGCTCATCAAGGATCTGCAGAGCCACGTGAAGGC GACCATTGCGCCCTATAAATATCCCCGCTCGATCATTTTTGCCGAAGAACTGCCAAAGACGCAGACCGGCAAGATTCAGC GGTTCCGGCTTCGTTGA
Upstream 100 bases:
>100_bases AACTCTATCGCGAAATCAGGGCGTTGCGCATCTATGAGGGCGCGAGCGACGTTCAGCGCGTGGTGATCGCGCGGCAGGCG ATGATGGCATTGGAGGGCAA
Downstream 100 bases:
>100_bases ATAATAAAACAAACCAACCACAAACAGGGAGTTTGATCATGAAGAAGCTAATGTTGGCCACAGCGGCCGCGGCGCTGGCC GCGGGCGGAGCGATGGCAGA
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: Benzoyl-CoA synthetase [H]
Number of amino acids: Translated: 538; Mature: 538
Protein sequence:
>538_residues MMTLGASAHTDTFTRDALPPADQWPDFMLEGFEYPEHLNAGVELTDAMVERGFGDRTALIGNGRQRTYKELADWTNRLAH ALVQDLGVKPGNRILIRSANNPAMVACWLAATKAGAVVVNTMPMLRAAELKKYVEKAQIQFALCDTRLMEEMEACAAQCD VLERVVGFDGTSNHDAELDRLALEKPVQFEAVETGRDDVALLGFTSGSTGEPKATMHFHRDLLIIADGYARDVLNVVPED IFVGSPPLAFTFGLGGLAIFPLRFGATATLLEQATPPNMIEIIEKYRATVCFTAPTAYRVMLSAMEEGADLSSLRAAVSA GETLPKPVYDDWMAKTGKPMLDGIGATEMLHIFISNRFDDHRPACTGKPVRGYEAKVVDDEGNTVPDGEVGRLAVRGPTG CRYLNDDRQAGYVADGWNITGDSFIRDADGYFHFAARNDDMIVSAGYNIAGPEVEAALLAHAAVAECAVIGAPDEARGHI VQAHIVLNADFAPSETLIKDLQSHVKATIAPYKYPRSIIFAEELPKTQTGKIQRFRLR
Sequences:
>Translated_538_residues MMTLGASAHTDTFTRDALPPADQWPDFMLEGFEYPEHLNAGVELTDAMVERGFGDRTALIGNGRQRTYKELADWTNRLAH ALVQDLGVKPGNRILIRSANNPAMVACWLAATKAGAVVVNTMPMLRAAELKKYVEKAQIQFALCDTRLMEEMEACAAQCD VLERVVGFDGTSNHDAELDRLALEKPVQFEAVETGRDDVALLGFTSGSTGEPKATMHFHRDLLIIADGYARDVLNVVPED IFVGSPPLAFTFGLGGLAIFPLRFGATATLLEQATPPNMIEIIEKYRATVCFTAPTAYRVMLSAMEEGADLSSLRAAVSA GETLPKPVYDDWMAKTGKPMLDGIGATEMLHIFISNRFDDHRPACTGKPVRGYEAKVVDDEGNTVPDGEVGRLAVRGPTG CRYLNDDRQAGYVADGWNITGDSFIRDADGYFHFAARNDDMIVSAGYNIAGPEVEAALLAHAAVAECAVIGAPDEARGHI VQAHIVLNADFAPSETLIKDLQSHVKATIAPYKYPRSIIFAEELPKTQTGKIQRFRLR >Mature_538_residues MMTLGASAHTDTFTRDALPPADQWPDFMLEGFEYPEHLNAGVELTDAMVERGFGDRTALIGNGRQRTYKELADWTNRLAH ALVQDLGVKPGNRILIRSANNPAMVACWLAATKAGAVVVNTMPMLRAAELKKYVEKAQIQFALCDTRLMEEMEACAAQCD VLERVVGFDGTSNHDAELDRLALEKPVQFEAVETGRDDVALLGFTSGSTGEPKATMHFHRDLLIIADGYARDVLNVVPED IFVGSPPLAFTFGLGGLAIFPLRFGATATLLEQATPPNMIEIIEKYRATVCFTAPTAYRVMLSAMEEGADLSSLRAAVSA GETLPKPVYDDWMAKTGKPMLDGIGATEMLHIFISNRFDDHRPACTGKPVRGYEAKVVDDEGNTVPDGEVGRLAVRGPTG CRYLNDDRQAGYVADGWNITGDSFIRDADGYFHFAARNDDMIVSAGYNIAGPEVEAALLAHAAVAECAVIGAPDEARGHI VQAHIVLNADFAPSETLIKDLQSHVKATIAPYKYPRSIIFAEELPKTQTGKIQRFRLR
Specific function: Catalyzes the ligation of benzoate and CoA to form benzoyl-CoA at the expense of ATP. The enzyme also ligates 2- aminobenzoate and CoA. The enzyme shows activity toward a number of benzoate derivates [H]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family. Benzoate-CoA ligase subfamily [H]
Homologues:
Organism=Homo sapiens, GI42544132, Length=490, Percent_Identity=30.6122448979592, Blast_Score=237, Evalue=2e-62, Organism=Homo sapiens, GI122937307, Length=535, Percent_Identity=28.9719626168224, Blast_Score=218, Evalue=8e-57, Organism=Homo sapiens, GI38505220, Length=485, Percent_Identity=30.7216494845361, Blast_Score=218, Evalue=9e-57, Organism=Homo sapiens, GI58082049, Length=493, Percent_Identity=29.8174442190669, Blast_Score=215, Evalue=8e-56, Organism=Homo sapiens, GI157311624, Length=493, Percent_Identity=29.6146044624746, Blast_Score=213, Evalue=3e-55, Organism=Homo sapiens, GI157311622, Length=493, Percent_Identity=29.6146044624746, Blast_Score=213, Evalue=3e-55, Organism=Homo sapiens, GI115511026, Length=542, Percent_Identity=27.6752767527675, Blast_Score=191, Evalue=1e-48, Organism=Homo sapiens, GI187761345, Length=528, Percent_Identity=26.7045454545455, Blast_Score=166, Evalue=8e-41, Organism=Homo sapiens, GI187761343, Length=528, Percent_Identity=26.7045454545455, Blast_Score=166, Evalue=8e-41, Organism=Homo sapiens, GI28416953, Length=548, Percent_Identity=29.7445255474453, Blast_Score=163, Evalue=4e-40, Organism=Homo sapiens, GI13375727, Length=582, Percent_Identity=23.8831615120275, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI8923896, Length=570, Percent_Identity=24.5614035087719, Blast_Score=130, Evalue=4e-30, Organism=Homo sapiens, GI253970489, Length=374, Percent_Identity=28.8770053475936, Blast_Score=127, Evalue=2e-29, Organism=Homo sapiens, GI156151445, Length=524, Percent_Identity=25.381679389313, Blast_Score=115, Evalue=8e-26, Organism=Homo sapiens, GI195947378, Length=458, Percent_Identity=21.8340611353712, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI42544134, Length=321, Percent_Identity=22.4299065420561, Blast_Score=99, Evalue=8e-21, Organism=Escherichia coli, GI145693145, Length=503, Percent_Identity=31.2127236580517, Blast_Score=181, Evalue=8e-47, Organism=Escherichia coli, GI1790505, Length=538, Percent_Identity=28.4386617100372, Blast_Score=180, Evalue=3e-46, Organism=Escherichia coli, GI1788107, Length=540, Percent_Identity=27.037037037037, Blast_Score=178, Evalue=7e-46, Organism=Escherichia coli, GI221142682, Length=507, Percent_Identity=26.4299802761341, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI1786810, Length=544, Percent_Identity=26.6544117647059, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1786529, Length=531, Percent_Identity=26.5536723163842, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1789201, Length=354, Percent_Identity=24.8587570621469, Blast_Score=79, Evalue=6e-16, Organism=Caenorhabditis elegans, GI71994703, Length=542, Percent_Identity=28.5977859778598, Blast_Score=139, Evalue=4e-33, Organism=Caenorhabditis elegans, GI71994694, Length=542, Percent_Identity=28.5977859778598, Blast_Score=139, Evalue=4e-33, Organism=Caenorhabditis elegans, GI71994690, Length=542, Percent_Identity=28.5977859778598, Blast_Score=139, Evalue=5e-33, Organism=Caenorhabditis elegans, GI17538037, Length=500, Percent_Identity=26.4, Blast_Score=137, Evalue=1e-32, Organism=Caenorhabditis elegans, GI17557194, Length=501, Percent_Identity=26.3473053892216, Blast_Score=130, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17558820, Length=498, Percent_Identity=25.3012048192771, Blast_Score=130, Evalue=2e-30, Organism=Caenorhabditis elegans, GI71996755, Length=513, Percent_Identity=25.3411306042885, Blast_Score=126, Evalue=3e-29, Organism=Caenorhabditis elegans, GI71982997, Length=562, Percent_Identity=25.6227758007117, Blast_Score=122, Evalue=3e-28, Organism=Caenorhabditis elegans, GI71983001, Length=562, Percent_Identity=25.6227758007117, Blast_Score=122, Evalue=4e-28, Organism=Caenorhabditis elegans, GI32563687, Length=486, Percent_Identity=24.0740740740741, Blast_Score=120, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17531443, Length=491, Percent_Identity=23.8289205702648, Blast_Score=112, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17560140, Length=497, Percent_Identity=23.943661971831, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17559526, Length=364, Percent_Identity=27.4725274725275, Blast_Score=106, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17560308, Length=515, Percent_Identity=25.2427184466019, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71985884, Length=396, Percent_Identity=27.020202020202, Blast_Score=94, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6319264, Length=527, Percent_Identity=28.0834914611006, Blast_Score=153, Evalue=5e-38, Organism=Saccharomyces cerevisiae, GI6323182, Length=545, Percent_Identity=26.9724770642202, Blast_Score=143, Evalue=6e-35, Organism=Saccharomyces cerevisiae, GI6319699, Length=359, Percent_Identity=27.5766016713092, Blast_Score=124, Evalue=6e-29, Organism=Drosophila melanogaster, GI24667955, Length=558, Percent_Identity=28.3154121863799, Blast_Score=147, Evalue=2e-35, Organism=Drosophila melanogaster, GI24581924, Length=522, Percent_Identity=26.0536398467433, Blast_Score=140, Evalue=1e-33, Organism=Drosophila melanogaster, GI62472339, Length=526, Percent_Identity=28.3269961977186, Blast_Score=140, Evalue=2e-33, Organism=Drosophila melanogaster, GI24667959, Length=438, Percent_Identity=29.4520547945205, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI21355181, Length=511, Percent_Identity=27.9843444227006, Blast_Score=131, Evalue=9e-31, Organism=Drosophila melanogaster, GI21355225, Length=555, Percent_Identity=24.6846846846847, Blast_Score=124, Evalue=2e-28, Organism=Drosophila melanogaster, GI18859661, Length=495, Percent_Identity=23.6363636363636, Blast_Score=108, Evalue=7e-24, Organism=Drosophila melanogaster, GI24656500, Length=514, Percent_Identity=22.1789883268482, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI24653035, Length=492, Percent_Identity=23.5772357723577, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI19922652, Length=499, Percent_Identity=22.0440881763527, Blast_Score=82, Evalue=9e-16, Organism=Drosophila melanogaster, GI24648253, Length=479, Percent_Identity=22.3382045929019, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24648255, Length=479, Percent_Identity=22.3382045929019, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI21356441, Length=410, Percent_Identity=23.1707317073171, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI21356947, Length=496, Percent_Identity=23.3870967741935, Blast_Score=73, Evalue=6e-13, Organism=Drosophila melanogaster, GI281365686, Length=309, Percent_Identity=24.2718446601942, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000873 - InterPro: IPR011957 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.25 [H]
Molecular weight: Translated: 58622; Mature: 58622
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTLGASAHTDTFTRDALPPADQWPDFMLEGFEYPEHLNAGVELTDAMVERGFGDRTALI CCCCCCCCCCCCCHHCCCCCCCCCCHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCEEEE GNGRQRTYKELADWTNRLAHALVQDLGVKPGNRILIRSANNPAMVACWLAATKAGAVVVN CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEHHCCCCEEEEE TMPMLRAAELKKYVEKAQIQFALCDTRLMEEMEACAAQCDVLERVVGFDGTSNHDAELDR CCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH LALEKPVQFEAVETGRDDVALLGFTSGSTGEPKATMHFHRDLLIIADGYARDVLNVVPED HHHCCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCEEEEEECCHHHHHHHHCCHH IFVGSPPLAFTFGLGGLAIFPLRFGATATLLEQATPPNMIEIIEKYRATVCFTAPTAYRV HCCCCCCCEEEECCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHHCCEEEEECCHHHHH MLSAMEEGADLSSLRAAVSAGETLPKPVYDDWMAKTGKPMLDGIGATEMLHIFISNRFDD HHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCC HRPACTGKPVRGYEAKVVDDEGNTVPDGEVGRLAVRGPTGCRYLNDDRQAGYVADGWNIT CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCC GDSFIRDADGYFHFAARNDDMIVSAGYNIAGPEVEAALLAHAAVAECAVIGAPDEARGHI CCHHEECCCCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCE VQAHIVLNADFAPSETLIKDLQSHVKATIAPYKYPRSIIFAEELPKTQTGKIQRFRLR EEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHCCCCCCCCCEEEECC >Mature Secondary Structure MMTLGASAHTDTFTRDALPPADQWPDFMLEGFEYPEHLNAGVELTDAMVERGFGDRTALI CCCCCCCCCCCCCHHCCCCCCCCCCHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCEEEE GNGRQRTYKELADWTNRLAHALVQDLGVKPGNRILIRSANNPAMVACWLAATKAGAVVVN CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEHHCCCCEEEEE TMPMLRAAELKKYVEKAQIQFALCDTRLMEEMEACAAQCDVLERVVGFDGTSNHDAELDR CCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH LALEKPVQFEAVETGRDDVALLGFTSGSTGEPKATMHFHRDLLIIADGYARDVLNVVPED HHHCCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCEEEEEECCHHHHHHHHCCHH IFVGSPPLAFTFGLGGLAIFPLRFGATATLLEQATPPNMIEIIEKYRATVCFTAPTAYRV HCCCCCCCEEEECCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHHCCEEEEECCHHHHH MLSAMEEGADLSSLRAAVSAGETLPKPVYDDWMAKTGKPMLDGIGATEMLHIFISNRFDD HHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCC HRPACTGKPVRGYEAKVVDDEGNTVPDGEVGRLAVRGPTGCRYLNDDRQAGYVADGWNIT CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCC GDSFIRDADGYFHFAARNDDMIVSAGYNIAGPEVEAALLAHAAVAECAVIGAPDEARGHI CCHHEECCCCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCE VQAHIVLNADFAPSETLIKDLQSHVKATIAPYKYPRSIIFAEELPKTQTGKIQRFRLR EEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12897012 [H]