| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is livG [H]
Identifier: 99082074
GI number: 99082074
Start: 2347445
End: 2348194
Strand: Reverse
Name: livG [H]
Synonym: TM1040_2234
Alternate gene names: 99082074
Gene position: 2348194-2347445 (Counterclockwise)
Preceding gene: 99082075
Following gene: 99082073
Centisome position: 73.36
GC content: 64.67
Gene sequence:
>750_bases ATGACTGAGACGATCCTCGCCACATATGGCATCAGCAAATCCTTTGGCGCGCTCAAGGCCAGCCGTGACATCTCGATTGA CCTGCGCCCCGGCGAAATTCACGCCATCATCGGCCCCAATGGCGCAGGAAAGTCGACATTGATTGCTCAGATCTGCGGAT CGCTCACGCCGGATGCCGGACGTGTGGAGCTGATGGGGCAGGATGTGACCGGCCTAAGCACAGACCAGCGCGCGCGGGCG GGGCTGGGACGGACGTTCCAGATCTCTGCACTCGCGATGGAGGACACGGTGCTCGAGAATGCCACCCTTGGCGCGATGGG CGCCAGTGGTCGGCCGTGGCGGTTCTGGGCATCCGCGCTGGGTGATTCTGCGTTGCGGGATCGTGCCGAGGCGGCGCTCG AGCGCGTGGGCCTTGCAGAAAGCAAGGCCAAGCGCTGCGCTGACCTCAGCCATGGCCAACGCCGACAACTCGAGGTCGCG GTGGCCCTCACGCTTGCGCCCAAGGCCTTTGTGATGGACGAGCCCATGGCGGGGCTCGGGGCGGAAGGGTCGAAGAACCT CACCGGGTTCCTGGATGGCCTGCGCCAGGAGGCCCCGATCCTTCTGGTTGAACACGACATGGACGCGGTGTTTGCGCTCG CGGACCGGATCAGCGTTCTGGTCTATGGCGAGGTGATTGCCACGGGCAGCGTCGATCAGATCCGCACCGATCCGCGCGTG CGCGAAGCCTATCTGGGAGAAAGCGCATGA
Upstream 100 bases:
>100_bases ACTGAATTCTGGCACATCTTCCTCGGGCTGATCCTTCTTGCGGTCGTGCTCTTTGCGCGCGGTGGCATCACCGGGCTGGT GGCCGGGAAGGAGGCAACCC
Downstream 100 bases:
>100_bases GCCTTTTGTCCGTAAAATCTCTCACTGCCTCCTACGGCGTGAGCCAGGCCCTCTTTGGTGTCGATCTCGACATCAACCCG GGCGAGGTAGTGGCTTTGAT
Product: ABC transporter related
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein G [H]
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MTETILATYGISKSFGALKASRDISIDLRPGEIHAIIGPNGAGKSTLIAQICGSLTPDAGRVELMGQDVTGLSTDQRARA GLGRTFQISALAMEDTVLENATLGAMGASGRPWRFWASALGDSALRDRAEAALERVGLAESKAKRCADLSHGQRRQLEVA VALTLAPKAFVMDEPMAGLGAEGSKNLTGFLDGLRQEAPILLVEHDMDAVFALADRISVLVYGEVIATGSVDQIRTDPRV REAYLGESA
Sequences:
>Translated_249_residues MTETILATYGISKSFGALKASRDISIDLRPGEIHAIIGPNGAGKSTLIAQICGSLTPDAGRVELMGQDVTGLSTDQRARA GLGRTFQISALAMEDTVLENATLGAMGASGRPWRFWASALGDSALRDRAEAALERVGLAESKAKRCADLSHGQRRQLEVA VALTLAPKAFVMDEPMAGLGAEGSKNLTGFLDGLRQEAPILLVEHDMDAVFALADRISVLVYGEVIATGSVDQIRTDPRV REAYLGESA >Mature_248_residues TETILATYGISKSFGALKASRDISIDLRPGEIHAIIGPNGAGKSTLIAQICGSLTPDAGRVELMGQDVTGLSTDQRARAG LGRTFQISALAMEDTVLENATLGAMGASGRPWRFWASALGDSALRDRAEAALERVGLAESKAKRCADLSHGQRRQLEVAV ALTLAPKAFVMDEPMAGLGAEGSKNLTGFLDGLRQEAPILLVEHDMDAVFALADRISVLVYGEVIATGSVDQIRTDPRVR EAYLGESA
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=226, Percent_Identity=27.8761061946903, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI30795238, Length=226, Percent_Identity=27.8761061946903, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI116734710, Length=213, Percent_Identity=28.169014084507, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI21536376, Length=212, Percent_Identity=32.0754716981132, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI105990541, Length=209, Percent_Identity=29.1866028708134, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI31657092, Length=221, Percent_Identity=28.9592760180996, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI27262624, Length=223, Percent_Identity=26.9058295964126, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI27262626, Length=223, Percent_Identity=26.9058295964126, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI150417984, Length=211, Percent_Identity=30.3317535545024, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI153792144, Length=219, Percent_Identity=28.7671232876712, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI45446740, Length=213, Percent_Identity=25.8215962441315, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI47078218, Length=213, Percent_Identity=25.8215962441315, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI6005701, Length=223, Percent_Identity=29.1479820627803, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI27477115, Length=220, Percent_Identity=28.1818181818182, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI27436953, Length=215, Percent_Identity=24.6511627906977, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789864, Length=259, Percent_Identity=36.6795366795367, Blast_Score=161, Evalue=3e-41, Organism=Escherichia coli, GI1790525, Length=248, Percent_Identity=31.4516129032258, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI1788210, Length=238, Percent_Identity=34.0336134453782, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1788761, Length=242, Percent_Identity=32.2314049586777, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1790544, Length=243, Percent_Identity=31.6872427983539, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1788472, Length=227, Percent_Identity=28.1938325991189, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1789672, Length=232, Percent_Identity=28.8793103448276, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1789593, Length=245, Percent_Identity=28.1632653061224, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI87082268, Length=252, Percent_Identity=28.1746031746032, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1790190, Length=239, Percent_Identity=28.4518828451883, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789991, Length=229, Percent_Identity=30.5676855895196, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI48994997, Length=249, Percent_Identity=30.5220883534137, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI48995001, Length=225, Percent_Identity=30.2222222222222, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1790739, Length=242, Percent_Identity=28.9256198347107, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI87081782, Length=257, Percent_Identity=26.4591439688716, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI87081709, Length=243, Percent_Identity=27.1604938271605, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786398, Length=238, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787500, Length=226, Percent_Identity=27.4336283185841, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786319, Length=224, Percent_Identity=27.6785714285714, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787712, Length=232, Percent_Identity=25.8620689655172, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1788225, Length=237, Percent_Identity=29.535864978903, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789032, Length=241, Percent_Identity=28.2157676348548, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=27.6150627615063, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787370, Length=232, Percent_Identity=26.7241379310345, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=29.2237442922374, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788165, Length=237, Percent_Identity=27.8481012658228, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1786872, Length=237, Percent_Identity=28.2700421940928, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=28.2511210762332, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787029, Length=235, Percent_Identity=28.0851063829787, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=28.448275862069, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87081834, Length=227, Percent_Identity=29.0748898678414, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=28.82096069869, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787792, Length=228, Percent_Identity=27.1929824561404, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786563, Length=241, Percent_Identity=26.1410788381743, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=25.1046025104602, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787972, Length=222, Percent_Identity=26.1261261261261, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786803, Length=251, Percent_Identity=26.2948207171315, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789962, Length=243, Percent_Identity=26.7489711934156, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI145693107, Length=252, Percent_Identity=25.3968253968254, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788506, Length=221, Percent_Identity=26.2443438914027, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789586, Length=226, Percent_Identity=29.2035398230088, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87082267, Length=236, Percent_Identity=26.271186440678, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787548, Length=241, Percent_Identity=27.3858921161826, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786698, Length=208, Percent_Identity=27.8846153846154, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1787105, Length=211, Percent_Identity=31.2796208530806, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1787758, Length=258, Percent_Identity=25.1937984496124, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786703, Length=232, Percent_Identity=28.8793103448276, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48994943, Length=226, Percent_Identity=27.8761061946903, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789891, Length=216, Percent_Identity=30.0925925925926, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786345, Length=238, Percent_Identity=26.4705882352941, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1788002, Length=229, Percent_Identity=26.2008733624454, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1788897, Length=223, Percent_Identity=26.0089686098655, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787164, Length=238, Percent_Identity=28.9915966386555, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786253, Length=226, Percent_Identity=26.9911504424779, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788053, Length=211, Percent_Identity=28.436018957346, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786654, Length=213, Percent_Identity=25.3521126760563, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1787759, Length=256, Percent_Identity=24.609375, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1788644, Length=253, Percent_Identity=25.6916996047431, Blast_Score=60, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17510237, Length=236, Percent_Identity=27.9661016949153, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI115533608, Length=203, Percent_Identity=31.5270935960591, Blast_Score=87, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71983516, Length=228, Percent_Identity=28.0701754385965, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71983510, Length=228, Percent_Identity=28.0701754385965, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71983523, Length=228, Percent_Identity=28.0701754385965, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17565586, Length=215, Percent_Identity=25.1162790697674, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17533971, Length=220, Percent_Identity=24.0909090909091, Blast_Score=72, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6319856, Length=225, Percent_Identity=25.3333333333333, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI24648314, Length=234, Percent_Identity=27.7777777777778, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI221512771, Length=229, Percent_Identity=29.2576419213974, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24666092, Length=222, Percent_Identity=26.5765765765766, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI116007184, Length=231, Percent_Identity=27.2727272727273, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI221500365, Length=231, Percent_Identity=27.2727272727273, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24643674, Length=222, Percent_Identity=27.027027027027, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI28574150, Length=213, Percent_Identity=27.2300469483568, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI116007328, Length=213, Percent_Identity=27.2300469483568, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24641565, Length=213, Percent_Identity=30.5164319248826, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI28571209, Length=213, Percent_Identity=22.5352112676056, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397593, Length=213, Percent_Identity=27.6995305164319, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 26294; Mature: 26163
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTETILATYGISKSFGALKASRDISIDLRPGEIHAIIGPNGAGKSTLIAQICGSLTPDAG CCCEEEEECCCCCCCCHHCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC RVELMGQDVTGLSTDQRARAGLGRTFQISALAMEDTVLENATLGAMGASGRPWRFWASAL EEEEECCCCCCCCCCHHHHHCCCCEEEEEEEEHHHHHHCCCCEECCCCCCCCHHHHHHHH GDSALRDRAEAALERVGLAESKAKRCADLSHGQRRQLEVAVALTLAPKAFVMDEPMAGLG CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEECCCCCCCC AEGSKNLTGFLDGLRQEAPILLVEHDMDAVFALADRISVLVYGEVIATGSVDQIRTDPRV CCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHEEEEEEEEEECCCHHHHCCCCHH REAYLGESA HHHHCCCCC >Mature Secondary Structure TETILATYGISKSFGALKASRDISIDLRPGEIHAIIGPNGAGKSTLIAQICGSLTPDAG CCEEEEECCCCCCCCHHCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC RVELMGQDVTGLSTDQRARAGLGRTFQISALAMEDTVLENATLGAMGASGRPWRFWASAL EEEEECCCCCCCCCCHHHHHCCCCEEEEEEEEHHHHHHCCCCEECCCCCCCCHHHHHHHH GDSALRDRAEAALERVGLAESKAKRCADLSHGQRRQLEVAVALTLAPKAFVMDEPMAGLG CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEECCCCCCCC AEGSKNLTGFLDGLRQEAPILLVEHDMDAVFALADRISVLVYGEVIATGSVDQIRTDPRV CCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHEEEEEEEEEECCCHHHHCCCCHH REAYLGESA HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]