| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yqiK [H]
Identifier: 99082035
GI number: 99082035
Start: 2304591
End: 2306279
Strand: Reverse
Name: yqiK [H]
Synonym: TM1040_2195
Alternate gene names: 99082035
Gene position: 2306279-2304591 (Counterclockwise)
Preceding gene: 99082036
Following gene: 99082032
Centisome position: 72.05
GC content: 62.82
Gene sequence:
>1689_bases ATGGATGGATCTTTCCTATTGGTGCCTGTCATCAGTATCTTGGCGCTGGTTGCCCTCATCGGGCTTGTCCTTGGACGGCT CTATCGCCGGGCCACCCGTGAAGTCAGCCTGGTAAAGACCGGCTCTGGCGGCAAAAAGGTCATTATGGACGGCGGTACGG TTGTGGTTCCGCTGCTGCATGAAATCAGCCCGGTCAACATGAAGACCCTGCGTCTGGAGGTGCAGCGCTCGGGTGAGGCG GCACTCATTACCCAGGACCGCATGCGGGTCGATGTGGGTGTGGAGTTCTACGTCTCGGTGATGGCCACCGAAGAAGGGAT TTCGCGCGCGGCGCAGACGCTTGGGGACCGCACATTCGATGTCGAGCAGCTGCGCGAGATGATCGAAGGCAAGCTCATCG ATGGTCTGCGCGCCGTGGCGGCCCAGATGACGATGGACGGGCTCCATGAAAACCGCGCCGATTTTGTGCAGGAGGTGCAG AATGCCGTCTCCGAGGATCTGCTGAAAAACGGTCTGTCGCTTGAATCCGTCTCGCTGACCGCGCTCGACCAGACACCCTT TGAGGCGCTGGATGAAAACAACGCCTTCAACGCGGTCGGTATGCGCAAGCTGGCAGAGGTGATTGCGACCTCCAAAAAAG AGCGCGCGCAGATCGACGCAGAGGCAGAAGTCGCCGTGCGCCGCGCCGCAATGGAAGCCGAGCGTCACAAGCTGTTGATC GAGCAGGATGAACAGCAGGCCCGCATCGAGCAGATGCAAAAGGTCGAGACCATGCGAGTCGCCCAAGAGGCGGAGATCGC AGCCCGGACCGAGGACTCGGTGCGCGAAACAGAACGCGCGCGGATCGCCCGCGAAGAAGCCATCCGCGCCGCCGATATTG AGCGCGAGCGCAAGATCCGCGAGGCCGAGATCACCAAGGAGCGCGAACTGGAGGTGGCCGAGCAGGAACGCCAGATCATC ATTGCGCAGAAATCCGAGGAAGAAAGCCGCGCCCGCGCCTCTGCCGACCTCGCCCGTGCCGAGGCCATCAAGGCGACCGA GGCCGTCGCGACCGCGCGTGAGGTGGCCGAGGCCGAGCGTCAAAAGCAGATTGTCCTCATTGAGGCTGCGCGAGAGGCAG AGCGTCAAGCCACTGGCATCCGTCTGGCCGCGCAGGCCGAAAAAGAAGCCGCCGCCGACCGCGCCGAGGCCCGTCGCGAG GAAGCACAGGCCGAGGCAGACGCGCTCAATATTCGCGCGGAGGCCAAGAAAAACGACATGCTGGCCGAAGCGGAAGGTAA ACGCGCCCTTGTGGAGGCGGACAATGCGCTCTCGCCGGAACTGGTGCGCATGAAGGTTGACCTCGCTCGCATCGAGGCGA TGCCCTCGATCATTGCAGAGATGGTGAAACCGGCCGAGAAAATCGACTCGATCAAGATCCATCAGGTCGGTGGCGTGGGC GGCGGCGCGGCCTACAGCAGCGCGGGCGCCTCTGGCGACAAACCCGTGGTCAATCAGGCGCTCGATTCCATCATGGGCAT GGCGGTGCAGATGCCGGCGCTCAAAACACTGGGGCGTGAACTGGGGATCTCAATGGAGGACGGCGTGTCCGGCGTGGTGA ACGGCATGCTGGAGGGCAATGACATCGCCCCCGAAGTCGCCGCCGACCCGGAGGCAACGGATCAGGCGAAGACCTCAGAG GTTCACTAA
Upstream 100 bases:
>100_bases GATCGGCGGAGCAAACGATATGTTCTGGTGCCGCTCTCTGAATAAGCGGCGCTCAGACTTCAAATCGATACGAACTATTT GAACAAAAAGGAGAATTGGG
Downstream 100 bases:
>100_bases GCGCTGATGCGCTGAGACATCGGAAAGGGCTGGCCGCGCGCTGGCCCTTTTTGTTTTGGGCGCGATGGAATGTGAATACG GGTTTGGCAGCTTTGAGCCC
Product: band 7 protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 562; Mature: 562
Protein sequence:
>562_residues MDGSFLLVPVISILALVALIGLVLGRLYRRATREVSLVKTGSGGKKVIMDGGTVVVPLLHEISPVNMKTLRLEVQRSGEA ALITQDRMRVDVGVEFYVSVMATEEGISRAAQTLGDRTFDVEQLREMIEGKLIDGLRAVAAQMTMDGLHENRADFVQEVQ NAVSEDLLKNGLSLESVSLTALDQTPFEALDENNAFNAVGMRKLAEVIATSKKERAQIDAEAEVAVRRAAMEAERHKLLI EQDEQQARIEQMQKVETMRVAQEAEIAARTEDSVRETERARIAREEAIRAADIERERKIREAEITKERELEVAEQERQII IAQKSEEESRARASADLARAEAIKATEAVATAREVAEAERQKQIVLIEAAREAERQATGIRLAAQAEKEAAADRAEARRE EAQAEADALNIRAEAKKNDMLAEAEGKRALVEADNALSPELVRMKVDLARIEAMPSIIAEMVKPAEKIDSIKIHQVGGVG GGAAYSSAGASGDKPVVNQALDSIMGMAVQMPALKTLGRELGISMEDGVSGVVNGMLEGNDIAPEVAADPEATDQAKTSE VH
Sequences:
>Translated_562_residues MDGSFLLVPVISILALVALIGLVLGRLYRRATREVSLVKTGSGGKKVIMDGGTVVVPLLHEISPVNMKTLRLEVQRSGEA ALITQDRMRVDVGVEFYVSVMATEEGISRAAQTLGDRTFDVEQLREMIEGKLIDGLRAVAAQMTMDGLHENRADFVQEVQ NAVSEDLLKNGLSLESVSLTALDQTPFEALDENNAFNAVGMRKLAEVIATSKKERAQIDAEAEVAVRRAAMEAERHKLLI EQDEQQARIEQMQKVETMRVAQEAEIAARTEDSVRETERARIAREEAIRAADIERERKIREAEITKERELEVAEQERQII IAQKSEEESRARASADLARAEAIKATEAVATAREVAEAERQKQIVLIEAAREAERQATGIRLAAQAEKEAAADRAEARRE EAQAEADALNIRAEAKKNDMLAEAEGKRALVEADNALSPELVRMKVDLARIEAMPSIIAEMVKPAEKIDSIKIHQVGGVG GGAAYSSAGASGDKPVVNQALDSIMGMAVQMPALKTLGRELGISMEDGVSGVVNGMLEGNDIAPEVAADPEATDQAKTSE VH >Mature_562_residues MDGSFLLVPVISILALVALIGLVLGRLYRRATREVSLVKTGSGGKKVIMDGGTVVVPLLHEISPVNMKTLRLEVQRSGEA ALITQDRMRVDVGVEFYVSVMATEEGISRAAQTLGDRTFDVEQLREMIEGKLIDGLRAVAAQMTMDGLHENRADFVQEVQ NAVSEDLLKNGLSLESVSLTALDQTPFEALDENNAFNAVGMRKLAEVIATSKKERAQIDAEAEVAVRRAAMEAERHKLLI EQDEQQARIEQMQKVETMRVAQEAEIAARTEDSVRETERARIAREEAIRAADIERERKIREAEITKERELEVAEQERQII IAQKSEEESRARASADLARAEAIKATEAVATAREVAEAERQKQIVLIEAAREAERQATGIRLAAQAEKEAAADRAEARRE EAQAEADALNIRAEAKKNDMLAEAEGKRALVEADNALSPELVRMKVDLARIEAMPSIIAEMVKPAEKIDSIKIHQVGGVG GGAAYSSAGASGDKPVVNQALDSIMGMAVQMPALKTLGRELGISMEDGVSGVVNGMLEGNDIAPEVAADPEATDQAKTSE VH
Specific function: Unknown
COG id: COG2268
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yuaG and Synechocystis PCC 6803 sll1021 [H]
Homologues:
Organism=Escherichia coli, GI1789430, Length=534, Percent_Identity=44.9438202247191, Blast_Score=395, Evalue=1e-111,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001107 [H]
Pfam domain/function: PF01145 Band_7 [H]
EC number: NA
Molecular weight: Translated: 61074; Mature: 61074
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGSFLLVPVISILALVALIGLVLGRLYRRATREVSLVKTGSGGKKVIMDGGTVVVPLLH CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCEEEEEHHH EISPVNMKTLRLEVQRSGEAALITQDRMRVDVGVEFYVSVMATEEGISRAAQTLGDRTFD CCCCCCEEEEEEEEECCCCEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCC VEQLREMIEGKLIDGLRAVAAQMTMDGLHENRADFVQEVQNAVSEDLLKNGLSLESVSLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE ALDQTPFEALDENNAFNAVGMRKLAEVIATSKKERAQIDAEAEVAVRRAAMEAERHKLLI EECCCCHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH EQDEQQARIEQMQKVETMRVAQEAEIAARTEDSVRETERARIAREEAIRAADIERERKIR CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAEITKERELEVAEQERQIIIAQKSEEESRARASADLARAEAIKATEAVATAREVAEAER HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKQIVLIEAAREAERQATGIRLAAQAEKEAAADRAEARREEAQAEADALNIRAEAKKNDM CCCEEEEEHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCC LAEAEGKRALVEADNALSPELVRMKVDLARIEAMPSIIAEMVKPAEKIDSIKIHQVGGVG CHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC GGAAYSSAGASGDKPVVNQALDSIMGMAVQMPALKTLGRELGISMEDGVSGVVNGMLEGN CCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHCCCCC DIAPEVAADPEATDQAKTSEVH CCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDGSFLLVPVISILALVALIGLVLGRLYRRATREVSLVKTGSGGKKVIMDGGTVVVPLLH CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCEEEEEHHH EISPVNMKTLRLEVQRSGEAALITQDRMRVDVGVEFYVSVMATEEGISRAAQTLGDRTFD CCCCCCEEEEEEEEECCCCEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCC VEQLREMIEGKLIDGLRAVAAQMTMDGLHENRADFVQEVQNAVSEDLLKNGLSLESVSLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE ALDQTPFEALDENNAFNAVGMRKLAEVIATSKKERAQIDAEAEVAVRRAAMEAERHKLLI EECCCCHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH EQDEQQARIEQMQKVETMRVAQEAEIAARTEDSVRETERARIAREEAIRAADIERERKIR CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAEITKERELEVAEQERQIIIAQKSEEESRARASADLARAEAIKATEAVATAREVAEAER HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKQIVLIEAAREAERQATGIRLAAQAEKEAAADRAEARREEAQAEADALNIRAEAKKNDM CCCEEEEEHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCC LAEAEGKRALVEADNALSPELVRMKVDLARIEAMPSIIAEMVKPAEKIDSIKIHQVGGVG CHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC GGAAYSSAGASGDKPVVNQALDSIMGMAVQMPALKTLGRELGISMEDGVSGVVNGMLEGN CCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHCCCCC DIAPEVAADPEATDQAKTSEVH CCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]