| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082028
Identifier: 99082028
GI number: 99082028
Start: 2297712
End: 2298629
Strand: Reverse
Name: 99082028
Synonym: TM1040_2188
Alternate gene names: NA
Gene position: 2298629-2297712 (Counterclockwise)
Preceding gene: 99082030
Following gene: 99082027
Centisome position: 71.81
GC content: 61.11
Gene sequence:
>918_bases ATGCCGCTTTCCATGAACCGAGAGGTCTTTATCACCTGTGCAGTGACCGGCTCTGGGGGAACGCAGGATCGCAGCCCGCA TGTGCCTCGTTCGCCCAAGGAAATTGCAGAAAGCGCGATTGCCGCCGCCAAGGCAGGGGCCGCGATTGTGCATTGTCATG TGCGCGACCCAGAAACCGGCGCGCCCTCGCGGGATCTTGGTCTTTATCGCGAGGTCACCGACCGCATCCGCGAGAGCGAT ACCGATGTGGTGTTGAATCTCACTGCGGGCATGGGGGGCGATATCGTCTTTGGCGGGGTCGAGCGCCCGCTGCCCGTGAC CGAAGACGGCACCGACATGATCGGCGCAAGCGCGCGTGTGGCGCATGTGGCGGAATGCCTGCCGGAGATCTGCACGTTGG ATTGCGGCACCATGAATTTTGCCGAGGCCGACTATGTGATGACCAACACGCCCGGCATGTTGCAGGCGATGGGGCAGATG ATGACGGATCTTGGCGTGAAGCCCGAGATCGAAGCCTTTGACACCGGGCATCTTTGGTATGCCAAGCAACTGGTCAAAGA CGGCGTGCTGAAATCGGATGCTCTGGTGCAGCTCTGCATGGGGGTCCCATGGGGGGCGCCCAATGATCTCAATACTTTTA TGGCGATGGTCAACAATGTGCCCGACGACTGGAACTGGTCGGCGTTCTCGCTGGGGCGTGATCAGATGGCTTATGTGGCG GCCTCAGTGCTGGCAGGCGGCAATGTGCGCGTGGGGCTGGAGGATAACCTCTATCTCGACAAGGGCGTGCTGGCCGAAAA CTGGCAACTGGTGGAGCGCGCTGGCACCATCGTGTCCAACCTTGGCGCGCGTGTGATCACGCCGGCAGAAGTGCGCGAGA AGCTTGGCCTGCAGAAACGCGCCCCGATCACCAAGTAA
Upstream 100 bases:
>100_bases CAAGGCTGAGCCAGACTGCAGATCAGCGCAAATTGGAATCCGGGGAGAAGCCTGGGGATAACCCGGGGCACAACCCTGTA CATCAGAGGGAAAACACAAA
Downstream 100 bases:
>100_bases TCGGGAACGAAAGCCGGGGGCAGGGGTTAGAGTTGAAAGATATTTTGCCCCCGGAGGTCCGTATCATGATTGCAGTTGCT TTTCGCTCCACACTCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MPLSMNREVFITCAVTGSGGTQDRSPHVPRSPKEIAESAIAAAKAGAAIVHCHVRDPETGAPSRDLGLYREVTDRIRESD TDVVLNLTAGMGGDIVFGGVERPLPVTEDGTDMIGASARVAHVAECLPEICTLDCGTMNFAEADYVMTNTPGMLQAMGQM MTDLGVKPEIEAFDTGHLWYAKQLVKDGVLKSDALVQLCMGVPWGAPNDLNTFMAMVNNVPDDWNWSAFSLGRDQMAYVA ASVLAGGNVRVGLEDNLYLDKGVLAENWQLVERAGTIVSNLGARVITPAEVREKLGLQKRAPITK
Sequences:
>Translated_305_residues MPLSMNREVFITCAVTGSGGTQDRSPHVPRSPKEIAESAIAAAKAGAAIVHCHVRDPETGAPSRDLGLYREVTDRIRESD TDVVLNLTAGMGGDIVFGGVERPLPVTEDGTDMIGASARVAHVAECLPEICTLDCGTMNFAEADYVMTNTPGMLQAMGQM MTDLGVKPEIEAFDTGHLWYAKQLVKDGVLKSDALVQLCMGVPWGAPNDLNTFMAMVNNVPDDWNWSAFSLGRDQMAYVA ASVLAGGNVRVGLEDNLYLDKGVLAENWQLVERAGTIVSNLGARVITPAEVREKLGLQKRAPITK >Mature_304_residues PLSMNREVFITCAVTGSGGTQDRSPHVPRSPKEIAESAIAAAKAGAAIVHCHVRDPETGAPSRDLGLYREVTDRIRESDT DVVLNLTAGMGGDIVFGGVERPLPVTEDGTDMIGASARVAHVAECLPEICTLDCGTMNFAEADYVMTNTPGMLQAMGQMM TDLGVKPEIEAFDTGHLWYAKQLVKDGVLKSDALVQLCMGVPWGAPNDLNTFMAMVNNVPDDWNWSAFSLGRDQMAYVAA SVLAGGNVRVGLEDNLYLDKGVLAENWQLVERAGTIVSNLGARVITPAEVREKLGLQKRAPITK
Specific function: Unknown
COG id: COG3246
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32701; Mature: 32570
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSMNREVFITCAVTGSGGTQDRSPHVPRSPKEIAESAIAAAKAGAAIVHCHVRDPETG CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC APSRDLGLYREVTDRIRESDTDVVLNLTAGMGGDIVFGGVERPLPVTEDGTDMIGASARV CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHCCHHHH AHVAECLPEICTLDCGTMNFAEADYVMTNTPGMLQAMGQMMTDLGVKPEIEAFDTGHLWY HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEECCCHHHH AKQLVKDGVLKSDALVQLCMGVPWGAPNDLNTFMAMVNNVPDDWNWSAFSLGRDQMAYVA HHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHH ASVLAGGNVRVGLEDNLYLDKGVLAENWQLVERAGTIVSNLGARVITPAEVREKLGLQKR HHHHCCCCEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCC APITK CCCCC >Mature Secondary Structure PLSMNREVFITCAVTGSGGTQDRSPHVPRSPKEIAESAIAAAKAGAAIVHCHVRDPETG CCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC APSRDLGLYREVTDRIRESDTDVVLNLTAGMGGDIVFGGVERPLPVTEDGTDMIGASARV CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHCCHHHH AHVAECLPEICTLDCGTMNFAEADYVMTNTPGMLQAMGQMMTDLGVKPEIEAFDTGHLWY HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEECCCHHHH AKQLVKDGVLKSDALVQLCMGVPWGAPNDLNTFMAMVNNVPDDWNWSAFSLGRDQMAYVA HHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHH ASVLAGGNVRVGLEDNLYLDKGVLAENWQLVERAGTIVSNLGARVITPAEVREKLGLQKR HHHHCCCCEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCC APITK CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA