| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081991
Identifier: 99081991
GI number: 99081991
Start: 2258932
End: 2260680
Strand: Direct
Name: 99081991
Synonym: TM1040_2151
Alternate gene names: NA
Gene position: 2258932-2260680 (Clockwise)
Preceding gene: 99081989
Following gene: 99081992
Centisome position: 70.57
GC content: 57.8
Gene sequence:
>1749_bases ATGAAGGTAAACTTCTGGACTTCATCGGCCCTGACCGGTGCGCTCGGTCGCCGGGCCATTGTGGACCGCATGCGTCAGTT TCGCAGGGACGAAAGTGGTGTCCTTGCCAAGCCGATGATTATGATCGTGGTCTTGATGTTCATGATCGGCGGTCTGGGTA TGGATATGGTACGCCTCGAACGCGACCGTACCAAACTGCAATACACTCTGGACCGCGCGGTACTTGCGGCAGCGGATCTC GACCAGCCCCTCGATCCCGAGGCAGTGGTTCTCGATTACATGTCAAAGTCGGGCCTTGGCGATTACACCACGGTGGTCGT CCCTGAGGTTTCACCCACGGCAAAGCGCGTAAAGGCGAGCGTCGATACCAATTTCACTGCATCCTGGATGAACAACGTCT TTTACGACGACTACATCCGCAATCCCGATACTTACCAGCTTGAGCCAATCACACTCCCGCTGCTGGCGTCCTCAACGGCG GTGGAGAGCATCGGCAACGTCGAGATCTCGCTGGTGCTGGACGTCTCGGGATCGATGCGCAGCAATGATCGCCTGGTGAA CCTCAAACGCGCCGCCAAAGAGTTCGTCCAGACGATGGATGACAACACCGAAGACGGCAAGATGAGCATTTCCATCGTGC CCTACTCGACACAGGTTTCCATGCCGGAGGCCTTTCTTGATGAGTTGAACGTCAGCAGCGAGCACGATTACTCCCACTGC ATCAACTTCTCGGGGTCCGATTTCAACAACGCCGGGATCAGCACGACCCAGGCCTACGAGCGCACCATGCACTTCACCGT CTGGAACAGCGGCGACTATCGCTCAAGAACCCGCCTCGTTCGTCAGCCGACCTGTGCCGCCCATTCCGACAACCCAGAGC GCACCGCGCTGTTGTTGTCGGACAATGTCACGCAGCTGCAAAACTACATCGACGCCTTTGTCCCATCCGAGAACACATCG ATTGACCTCGGCATGAAATGGGGCTCTGCCCTTCTCGACCCATCCGTGCAGCCCGTGATTGCCTCGCTGGCTGATGATGC AAATCCCAATCAGTCCATCGCATCGCGCTTTGCCAACCGTCCCGTCCCCTACACGGATACAGAGACGCTGAAGGTGATCG TGATGATGACCGACGGTCAGAATACGTCGCAGTACTACCTCAGGAACAGCTACCGCGAGGGCGACAGCCCGGTTTGGTAC AACGCCCAAGAGCGTGTTTATTCCACCTATGACCCCAACCGCGGTTCAAAACCCTATTACTGGGACAACTTGCAGCGGTG GGCGGATCACCCCTATGGCAACGGCACCTACGAGGAAACCTACTGCACCGGCACGCTCTACTACGGCAACTGCTATTACG GGTCCTGGCAGACCCGCACCGTGGACGAGCCCGGCACGGCCGTACAGCTGAGCTATCCTGATCTCTTTGCCGACACCTCG CTCAGGTATCTGCGGGATCGCCTGTTCGGCGACTGGATGAGCAACGCGAATTACTACTGGTTCTCCGGTCTGTTCAGCTC TGTCGGCTCCACGACAAAGGACGCGCGCACGCTGGACATCTGTGAAGCGGCCAAAGCCAAGGGCGTTGTGGTCTTTACCA TCGGGTTTGAGGCTCCGAGTCGAGGCCAGGAAGTCCTGCAGGCCTGCGCAAGCTCTGCATCCCATTACTACGATGTTGAC GGGCTGGAGATCTCCGATGCCTTCGCTTCAATTGCCTCCGCGATCCGCCAACTGAGGCTGACAGAATGA
Upstream 100 bases:
>100_bases CAACGAATAATGAAGAGTAATTTTACGTCCTCCTGCGCGCGCCCGCTTTCGCCCCTGAGCGCTGTGCGCCGTGCCCGCGG ACAGAAGGAAAGACGGAAAC
Downstream 100 bases:
>100_bases TCCATCTGCGTTTTATATCCAAACCGCTCCGGCAGTTCCGTCGCGATGAAGAAGGCAATGCAACCGTCGAGTTTGCAATG CTCTTTCCCCTGATGCTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 582; Mature: 582
Protein sequence:
>582_residues MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLERDRTKLQYTLDRAVLAAADL DQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKASVDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTA VESIGNVEISLVLDVSGSMRSNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQVSMPEAFLDELNVSSEHDYSHC INFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLVRQPTCAAHSDNPERTALLLSDNVTQLQNYIDAFVPSENTS IDLGMKWGSALLDPSVQPVIASLADDANPNQSIASRFANRPVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWY NAQERVYSTYDPNRGSKPYYWDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTS LRYLRDRLFGDWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPSRGQEVLQACASSASHYYDVD GLEISDAFASIASAIRQLRLTE
Sequences:
>Translated_582_residues MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLERDRTKLQYTLDRAVLAAADL DQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKASVDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTA VESIGNVEISLVLDVSGSMRSNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQVSMPEAFLDELNVSSEHDYSHC INFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLVRQPTCAAHSDNPERTALLLSDNVTQLQNYIDAFVPSENTS IDLGMKWGSALLDPSVQPVIASLADDANPNQSIASRFANRPVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWY NAQERVYSTYDPNRGSKPYYWDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTS LRYLRDRLFGDWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPSRGQEVLQACASSASHYYDVD GLEISDAFASIASAIRQLRLTE >Mature_582_residues MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLERDRTKLQYTLDRAVLAAADL DQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKASVDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTA VESIGNVEISLVLDVSGSMRSNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQVSMPEAFLDELNVSSEHDYSHC INFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLVRQPTCAAHSDNPERTALLLSDNVTQLQNYIDAFVPSENTS IDLGMKWGSALLDPSVQPVIASLADDANPNQSIASRFANRPVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWY NAQERVYSTYDPNRGSKPYYWDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTS LRYLRDRLFGDWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPSRGQEVLQACASSASHYYDVD GLEISDAFASIASAIRQLRLTE
Specific function: Unknown
COG id: COG4961
COG function: function code U; Flp pilus assembly protein TadG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65223; Mature: 65223
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLE CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH RDRTKLQYTLDRAVLAAADLDQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKAS HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH VDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTAVESIGNVEISLVLDVSGSMR CCCCEEHHHHHCCHHHHHCCCCCCEEECCEEEEEECCHHHHHHCCCEEEEEEEECCCCCC SNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQVSMPEAFLDELNVSSEHDYSHC CCCCEEHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHH INFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLVRQPTCAAHSDNPERTALLLS CCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEE DNVTQLQNYIDAFVPSENTSIDLGMKWGSALLDPSVQPVIASLADDANPNQSIASRFANR CCHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCC PVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWYNAQERVYSTYDPNRGSKPYY CCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCEEECHHHCEEECCCCCCCCCCEE WDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTS HHHHHHHHCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCCCEEEEECCCHHHHHH LRYLRDRLFGDWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPS HHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCC RGQEVLQACASSASHYYDVDGLEISDAFASIASAIRQLRLTE CHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLE CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH RDRTKLQYTLDRAVLAAADLDQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKAS HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH VDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTAVESIGNVEISLVLDVSGSMR CCCCEEHHHHHCCHHHHHCCCCCCEEECCEEEEEECCHHHHHHCCCEEEEEEEECCCCCC SNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQVSMPEAFLDELNVSSEHDYSHC CCCCEEHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHH INFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLVRQPTCAAHSDNPERTALLLS CCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEE DNVTQLQNYIDAFVPSENTSIDLGMKWGSALLDPSVQPVIASLADDANPNQSIASRFANR CCHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCC PVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWYNAQERVYSTYDPNRGSKPYY CCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCEEECHHHCEEECCCCCCCCCCEE WDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTS HHHHHHHHCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCCCEEEEECCCHHHHHH LRYLRDRLFGDWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPS HHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCC RGQEVLQACASSASHYYDVDGLEISDAFASIASAIRQLRLTE CHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA