| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081970
Identifier: 99081970
GI number: 99081970
Start: 2235462
End: 2236064
Strand: Reverse
Name: 99081970
Synonym: TM1040_2130
Alternate gene names: NA
Gene position: 2236064-2235462 (Counterclockwise)
Preceding gene: 99081971
Following gene: 99081969
Centisome position: 69.86
GC content: 65.34
Gene sequence:
>603_bases ATGGGGGGGCGTCCGACGCTTGGATCGGTGCCGGGGCTTGGCCACAACGGCGGCCCCAGTCTGGAGCCCGGCGCGCTCTG GCGCACCCATGCCTGGCGCTCGGCGCAAAAGAAACTGATGCCCAACACACTCCCAAAGCTGGTGCTGCAGATGCGGCTGA AGCGAGCGGCGGAGTTGGGCATGGATTACAAGACCTACGCAAAGGTGCGCCAGACTTCGGGGCAGGATGTGTTGGGGCTA TTGTTTTCCTCCAATGCGCTGCGTCTGTTGAAAGACCCCCGCTTGCCGGAAGTGGAGCGCGCGCGCTTGGCGCATCTTAA ACGGGCGGAGCGCTTGGCCCTGACCTACCCGCCGCTGCGCCCGTCAGAGGTGGCTCGGGTCAACCCCGAGATTGATGCCG CCGACACCGCCCCCGTCTTTACCGAGGGCTGGACAGAGATGCGCGCAAAGCTCCAAGGCGTGATGCGTCAGCGCGGACTG TCAGGGGCGTCGGTGCTGGTTATCGGTGATGCCCCGTTGGAAAACGAATGGGCCGCCGCTGGTCGGGCCGCAGCCTATCT GAGCGCTGCAGAGTATTTTGGCGCCTCTGCCCGGAGGCCCTGA
Upstream 100 bases:
>100_bases AGGAGGTCACCACATGGGGTGATGTGGCGGTGGGGGATCTCATCAACCTCGAAATCGACACGCTGGCCCGCTATGTCGCG CGGCTGCAAGAGAGCCTCTG
Downstream 100 bases:
>100_bases TCGATCGCGTCCTCGGGTCATTGGGGATGCGAGGCTCTGCCTCGCGCTCCGGGATATTTGGAGTTAGAAGACGGTACGGG ATGCCCTGTTTCTTCTAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MGGRPTLGSVPGLGHNGGPSLEPGALWRTHAWRSAQKKLMPNTLPKLVLQMRLKRAAELGMDYKTYAKVRQTSGQDVLGL LFSSNALRLLKDPRLPEVERARLAHLKRAERLALTYPPLRPSEVARVNPEIDAADTAPVFTEGWTEMRAKLQGVMRQRGL SGASVLVIGDAPLENEWAAAGRAAAYLSAAEYFGASARRP
Sequences:
>Translated_200_residues MGGRPTLGSVPGLGHNGGPSLEPGALWRTHAWRSAQKKLMPNTLPKLVLQMRLKRAAELGMDYKTYAKVRQTSGQDVLGL LFSSNALRLLKDPRLPEVERARLAHLKRAERLALTYPPLRPSEVARVNPEIDAADTAPVFTEGWTEMRAKLQGVMRQRGL SGASVLVIGDAPLENEWAAAGRAAAYLSAAEYFGASARRP >Mature_199_residues GGRPTLGSVPGLGHNGGPSLEPGALWRTHAWRSAQKKLMPNTLPKLVLQMRLKRAAELGMDYKTYAKVRQTSGQDVLGLL FSSNALRLLKDPRLPEVERARLAHLKRAERLALTYPPLRPSEVARVNPEIDAADTAPVFTEGWTEMRAKLQGVMRQRGLS GASVLVIGDAPLENEWAAAGRAAAYLSAAEYFGASARRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21789; Mature: 21658
Theoretical pI: Translated: 10.92; Mature: 10.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGRPTLGSVPGLGHNGGPSLEPGALWRTHAWRSAQKKLMPNTLPKLVLQMRLKRAAELG CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC MDYKTYAKVRQTSGQDVLGLLFSSNALRLLKDPRLPEVERARLAHLKRAERLALTYPPLR CCHHHHHHHHHCCCCHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCC PSEVARVNPEIDAADTAPVFTEGWTEMRAKLQGVMRQRGLSGASVLVIGDAPLENEWAAA CCHHHCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH GRAAAYLSAAEYFGASARRP HHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure GGRPTLGSVPGLGHNGGPSLEPGALWRTHAWRSAQKKLMPNTLPKLVLQMRLKRAAELG CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC MDYKTYAKVRQTSGQDVLGLLFSSNALRLLKDPRLPEVERARLAHLKRAERLALTYPPLR CCHHHHHHHHHCCCCHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCC PSEVARVNPEIDAADTAPVFTEGWTEMRAKLQGVMRQRGLSGASVLVIGDAPLENEWAAA CCHHHCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH GRAAAYLSAAEYFGASARRP HHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA