| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081936
Identifier: 99081936
GI number: 99081936
Start: 2202126
End: 2203304
Strand: Reverse
Name: 99081936
Synonym: TM1040_2096
Alternate gene names: NA
Gene position: 2203304-2202126 (Counterclockwise)
Preceding gene: 99081937
Following gene: 99081935
Centisome position: 68.83
GC content: 61.07
Gene sequence:
>1179_bases ATGGCGCATCACGAACGCGAAGGCCGGCCACAGTTTTCACAGCCGGTGCGTCAGGTTGTCATGATGCTGATTGCATTGGG ACTGGCGGGGGCGGGCGCTTTTATGGCGTTGCCGCGGGTGATGCCGGTCTTTGAAGCCAATCCCTATCTTAATGGCTTTA TCGCCTTTGTGTTCATCGTCGGGGTTTTGGCGACCTTCTGGCAGGTGATGCAGCTCATCAACTCGGTGCGCTGGATTGAA CGCTTTGCCGCCGGGGTCACCACCGACGAGGATCGCGCGCCCTCGATGCTGGCGCCACTGGCTGCGCTCTTGCGCTCTCG GGGCGCGCGGATGCAGCTTGGCTCGGCCTCGACCCGCTCAATTCTGGATTCCGTTGCAGAGCGCATCGACGAAGAGCGCG AAATCACGCGATATATCGTCAACCTTTTGATTTTTCTTGGTCTTTTGGGGACGTTTTACGGTCTGGCGACCACGGTACCA GCTGTTGTCGACACCATCCGCAGCCTTGCGCCCCAAGATGGCGAAGAGGGTGTCGCTATCTTTAACCGGCTGATGACGGG ACTTGAATCGCAGCTGGGCGGTATGGGCGTGGCCTTTGCCTCCTCGCTTTTGGGGCTGGCGGGATCGCTCATCGTGGGCC TGCTCGAACTCTTTGCGGGTCATGGGCAGAACCGCTTTTACCGCGAACTCGAGGAATGGCTGTCGTCCTTCACCCGTGTG AGTTTTTCCTCGGGCGAGGAGGGCGGCACCGGCGACAGCAACCTCGTGGCGGGCGTGCTTGATACGATGGCGGAGCAGAT GGACGCGCTTCAGGCGATGTTTGTGGAAACCGCTAAGGGACGCGCGGAGGTCGAAGGCAAGCTCTCGCGCCTGATCGACA CCATTGAGGACATGAACCGCCGTCAGGATGATGTGGCGTCGATCTCCGGTGCGCTCGAGCGTGTCGCGGTTGGTCAGGAG ACGCTCGCCGAACTGATGCGGGCCCATGGTGACGTTGGCATCGACGCCGAGAGCCGCATGCGCCTGCGTTCGATCGACGT ACAAATGCTGCGCATCCTCGAGGAAATCTCCGCCGGACGGCAAGAGAGCCTCTCGGAGCTGCGCAAGGACATCGACCTGC TGGTCAAAGCTTTCGCAGGCCCGCGTGGCATGGATCGCGCGGCGCGGAAAGAGAGCTAA
Upstream 100 bases:
>100_bases GGTCCGACAGATTTTATCATAAATCCTTGGCGACCATGGGACTTTCGGTCTAGGCTGCAGGCGCAGAACCAAGACAAAGC CTATCGGGAGCCGCAAAGAA
Downstream 100 bases:
>100_bases CCCATGGCCCTCAAGCGGCGCACTGGTCAACGGTTTCAAGGCTCGATCTGGCCCGGTTTCGTGGATGCGATGACCGGACT TTTGCTGGTTTTGATGTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: MotA/lQ/ExbB Proton Channel Family; Transmembrane Protein
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MAHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIVGVLATFWQVMQLINSVRWIE RFAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRSILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVP AVVDTIRSLAPQDGEEGVAIFNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRV SFSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKGRAEVEGKLSRLIDTIEDMNRRQDDVASISGALERVAVGQE TLAELMRAHGDVGIDAESRMRLRSIDVQMLRILEEISAGRQESLSELRKDIDLLVKAFAGPRGMDRAARKES
Sequences:
>Translated_392_residues MAHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIVGVLATFWQVMQLINSVRWIE RFAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRSILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVP AVVDTIRSLAPQDGEEGVAIFNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRV SFSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKGRAEVEGKLSRLIDTIEDMNRRQDDVASISGALERVAVGQE TLAELMRAHGDVGIDAESRMRLRSIDVQMLRILEEISAGRQESLSELRKDIDLLVKAFAGPRGMDRAARKES >Mature_391_residues AHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIVGVLATFWQVMQLINSVRWIER FAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRSILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVPA VVDTIRSLAPQDGEEGVAIFNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRVS FSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKGRAEVEGKLSRLIDTIEDMNRRQDDVASISGALERVAVGQET LAELMRAHGDVGIDAESRMRLRSIDVQMLRILEEISAGRQESLSELRKDIDLLVKAFAGPRGMDRAARKES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42757; Mature: 42626
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH GVLATFWQVMQLINSVRWIERFAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHH ILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVPAVVDTIRSLAPQDGEEGVAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH FNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRV HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH SFSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKGRAEVEGKLSRLIDTIEDMNR HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH RQDDVASISGALERVAVGQETLAELMRAHGDVGIDAESRMRLRSIDVQMLRILEEISAGR HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH QESLSELRKDIDLLVKAFAGPRGMDRAARKES HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC >Mature Secondary Structure AHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIV CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH GVLATFWQVMQLINSVRWIERFAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHH ILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVPAVVDTIRSLAPQDGEEGVAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH FNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRV HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH SFSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKGRAEVEGKLSRLIDTIEDMNR HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH RQDDVASISGALERVAVGQETLAELMRAHGDVGIDAESRMRLRSIDVQMLRILEEISAGR HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH QESLSELRKDIDLLVKAFAGPRGMDRAARKES HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA