| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081918
Identifier: 99081918
GI number: 99081918
Start: 2181427
End: 2182290
Strand: Direct
Name: 99081918
Synonym: TM1040_2078
Alternate gene names: NA
Gene position: 2181427-2182290 (Clockwise)
Preceding gene: 99081917
Following gene: 99081922
Centisome position: 68.15
GC content: 61.34
Gene sequence:
>864_bases ATGCACACCACTGATCTTCTGCGCCTTGCCGCTCTGGTTTTCACCGCCGTCACCTGTGTTGTGCTTGGCGATACCGCAGG TAAAGTGCTGACCTCGGGCGGTGTGGATCCGGTGATCGTCGCTTGGGCACGCTTTGGACTTGGGGCTTTGGTGCTCCTGC CGCTGAGTGGTCTGCGTCTTACCGAGCTGTCGATTGCCCGCGACTGGAGGGTCTGGCTCAGGGCAGGCTTTGTCACCGCC GGGATTTCCTGCATTCTGACCGCGCTGCGCACAGAGCCGATCGCCAATGTGTTTGGCGCATTTTTTGTGGGGCCCGGCGT TTCCTATGTGATTGCGGTCCTGTTCCTGGGCGAGCGCCCCTCGCCGCTGCGCAGCCTGCTGCTGGGGCTTGGGTTCATTG GCGTCATGCTGGTGGTCAAACCCGGGTTCGGCGTGAGCTTTGGGCTGTTCTACGCGCTGGCGGCGGGGTGTTTCTATGGC GCCTATCTGGCAATGACCCGCACCGTGGCCGGCAGCTATCGACCGCGACTTTTGTTGATGTCGCAGCTGCTGATCGGCAC GCTGCTGCTGACCCCGATGGGGCTCAGCGTGGAGATGCCGACACTTGACTGGACGATCTTTACGCTCCTGTCGCTGAGCG CGCTCGGTTCGGCAGTCGGGAACTATATTCTCGTGGTCGTGAACAAAACCGCCGAGGCCTCTCTGATTGCGCCGTTGGTC TACAGCCAGTTGATTTCGGCAACTGTGCTGGGCGTCGTGGTTTTTGGCGAGTGGCCCGATGTGATTTCGCTTTGTGGTCT TGGGCTGATCCTCCTGTCAGGGTTTGGCTCGCTTCTGGCCCATCAGCGCGCGACGCCGCTCTGA
Upstream 100 bases:
>100_bases GCCCCGCGATATGACACTGCACACCAGAACATAGTGAGCGCTTTGGATCTCCAGCCGCAGCTGATAGGCAGGTGATACCC TGTCCACCTTACGGTTCCCC
Downstream 100 bases:
>100_bases GCGGTGAGGCGGCGCGCCTTGGCCCGCCACCGGATCCTCCAAGAGGGTCTCGCAGATGCGGCTCAGTCCACATCCGGCTC GGTGAGATCAAGACTAGATG
Product: hypothetical protein
Products: NA
Alternate protein names: Permease Protein
Number of amino acids: Translated: 287; Mature: 287
Protein sequence:
>287_residues MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRLTELSIARDWRVWLRAGFVTA GISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERPSPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYG AYLAMTRTVAGSYRPRLLLMSQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSAVGNYILVVVNKTAEASLIAPLV YSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLAHQRATPL
Sequences:
>Translated_287_residues MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRLTELSIARDWRVWLRAGFVTA GISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERPSPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYG AYLAMTRTVAGSYRPRLLLMSQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSAVGNYILVVVNKTAEASLIAPLV YSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLAHQRATPL >Mature_287_residues MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRLTELSIARDWRVWLRAGFVTA GISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERPSPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYG AYLAMTRTVAGSYRPRLLLMSQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSAVGNYILVVVNKTAEASLIAPLV YSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLAHQRATPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30203; Mature: 30203
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRL CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEE TELSIARDWRVWLRAGFVTAGISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC SPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYGAYLAMTRTVAGSYRPRLLLM CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH SQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSAVGNYILVVVNKTAEASLIAPLV HHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHH YSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLAHQRATPL HHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRL CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEE TELSIARDWRVWLRAGFVTAGISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC SPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYGAYLAMTRTVAGSYRPRLLLM CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH SQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSAVGNYILVVVNKTAEASLIAPLV HHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHH YSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLAHQRATPL HHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA