| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081876
Identifier: 99081876
GI number: 99081876
Start: 2144634
End: 2145170
Strand: Direct
Name: 99081876
Synonym: TM1040_2036
Alternate gene names: NA
Gene position: 2144634-2145170 (Clockwise)
Preceding gene: 99081874
Following gene: 99081877
Centisome position: 67.0
GC content: 60.71
Gene sequence:
>537_bases ATGCTGATCCCTCGCCAGAAAACCCCGGACCTTACCCTGCCTCTCTTGGGTGGCGGCCAGTTTGATCTGGCCTCCGAGGC CTCTGAACGCGGCACCGTCATCTGCTTTTACCGTGGCCTGCACTGCCCGATTTGTGCCAACTACCTCAAGGAGTTCGAAA AGCGCGTGGCCGACTTTGCCGAGCGCGGCGTGAAGACCATCGCCATCAGCTCTGACGGCGAGGAGCGCACCCGCCAGATG GCAGAGAAGATCGAAGCCGAAAACCTGCGCTTTGCCTATGATCTGCCGCTCTCCGTGGCCAAGGACTGGGGGCTCTATAT CTCCACCTCGCGGGGCAAGACATCGATTGGCATTGAAGAGCCTGCGCTCTTTGCCGAGCCGGGCCTCTTTATGGTGACAC CCGAGCAGACGCTGTACTACGGCTCTGTGCAGACGATGCCCTTTGTGCGCCCGCATTTCTCGGAACTGGTGGCGGCGCTA GATTTTGCCATTGCCAATTCCTATCCGGCGCGCGGCGAATACACCGGCGCGGTCTGA
Upstream 100 bases:
>100_bases GCCCAGAGTCGTGCGATACCCTCTGCAGAGCTGTTCCGGCGCGCCGGGACAGTGTCACATCAGACACCCCTCAAGACTGA CCCACATACGGAGACACATC
Downstream 100 bases:
>100_bases GCGCACCTCTGCATCCCAGCTGCATCACCGGTCCCCGAAACGGCCAAGAGCAATGGACATCGCCTGACCAAGAAGGCATA TGGGCCTGACCAGTTTTACG
Product: redoxin
Products: NA
Alternate protein names: Thioredoxin Peroxidase; Redoxin Domain-Containing Protein; AhpC/TSA Family Protein; Antioxidant AhpC/TSA Family
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MLIPRQKTPDLTLPLLGGGQFDLASEASERGTVICFYRGLHCPICANYLKEFEKRVADFAERGVKTIAISSDGEERTRQM AEKIEAENLRFAYDLPLSVAKDWGLYISTSRGKTSIGIEEPALFAEPGLFMVTPEQTLYYGSVQTMPFVRPHFSELVAAL DFAIANSYPARGEYTGAV
Sequences:
>Translated_178_residues MLIPRQKTPDLTLPLLGGGQFDLASEASERGTVICFYRGLHCPICANYLKEFEKRVADFAERGVKTIAISSDGEERTRQM AEKIEAENLRFAYDLPLSVAKDWGLYISTSRGKTSIGIEEPALFAEPGLFMVTPEQTLYYGSVQTMPFVRPHFSELVAAL DFAIANSYPARGEYTGAV >Mature_178_residues MLIPRQKTPDLTLPLLGGGQFDLASEASERGTVICFYRGLHCPICANYLKEFEKRVADFAERGVKTIAISSDGEERTRQM AEKIEAENLRFAYDLPLSVAKDWGLYISTSRGKTSIGIEEPALFAEPGLFMVTPEQTLYYGSVQTMPFVRPHFSELVAAL DFAIANSYPARGEYTGAV
Specific function: Unknown
COG id: COG0450
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19724; Mature: 19724
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIPRQKTPDLTLPLLGGGQFDLASEASERGTVICFYRGLHCPICANYLKEFEKRVADFA CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH ERGVKTIAISSDGEERTRQMAEKIEAENLRFAYDLPLSVAKDWGLYISTSRGKTSIGIEE HCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCHHHHCCCCEEEECCCCCEECCCCC PALFAEPGLFMVTPEQTLYYGSVQTMPFVRPHFSELVAALDFAIANSYPARGEYTGAV CCEEECCCEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MLIPRQKTPDLTLPLLGGGQFDLASEASERGTVICFYRGLHCPICANYLKEFEKRVADFA CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH ERGVKTIAISSDGEERTRQMAEKIEAENLRFAYDLPLSVAKDWGLYISTSRGKTSIGIEE HCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCHHHHCCCCEEEECCCCCEECCCCC PALFAEPGLFMVTPEQTLYYGSVQTMPFVRPHFSELVAALDFAIANSYPARGEYTGAV CCEEECCCEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA