| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is argM [C]
Identifier: 99081871
GI number: 99081871
Start: 2140200
End: 2141552
Strand: Direct
Name: argM [C]
Synonym: TM1040_2031
Alternate gene names: 99081871
Gene position: 2140200-2141552 (Clockwise)
Preceding gene: 99081869
Following gene: 99081873
Centisome position: 66.86
GC content: 62.01
Gene sequence:
>1353_bases ATGGCGAGCGTGATCTACCCGACGACGAATTTCACCGCGACGGAGCAGCTCTGCATCACCCACGGTGAGGGGATCTACGT CTATGACGACACCGGCAAACAATATATCGAAGGCCTCGCGGGCCTGTGGTGTACCTCGCTGGGCTATTCCAACACCGAGG TGGTCGAGGCCATCACCGAGCAGTTGAAACGCCTGCCCTTCCAGCACACGTTTGGCGGCAAGACCCACGCGCCGGTGATG GAGTTGGCCGAAAAGCTGAAGGCAATGGTGCCGGTCGAGGACGCCTATTTCTTCTTTGGCAATTCCGGCTCGGACGCAAA CGACAGCCACTACAAGATGCTGCGCTATTACTTCAACGCGATCGGCAAGCCGCACAAGCGCAAGATCATCACTCGCGAGC GCGGCTATCACGGCGTGACCGTGGCGGCGGGATCGCTGACCTCCCTGCCTGCGAACCTCGCCCATTTCGACGCCCCGCTT GAGGCGCTCTCGATCCTGCGCACCGATGCGCCGCATTATTACACCGGCCGCCAAGGCAATGAGACCGAAGCGCAGTTTGT CGAGCGCATCCTGCAAAACCTCGAAGACCAGATCCTCGCCGAGGACCCCGACACGATCGCCGCGATGATCATCGAGCCGA TCACCGGCGCCTCCGGTGTAATCGTGCCCCCCGAAGGCTACTACGAGGGGCTGCAGGCGCTTTTGCGCAAACATGGCATC CTGATCTGGGCGGATGAGGTCATCTGCGGCTTTGGTCGCACAGGCGCCGATTTTGGCTGCACCACCATGGGCATCAAACC GGACCTCATGACCTTTGCCAAGCAGCTGTCTTCGGCCTATTTCCCGATCTCCGCCTCCGTCATTCCCGGCTGGATGTACA AGGCGATGGTGGATCAGACCAATGAGGTCGGCGTCTTTGGCCATGGCTACACCTACTCGGGCCACCCCGCCGCCTGTGCT GCGGCCCTGAAGACGCTCGAAATCTACGAGCGCGACAAGATCTTTGACCACGCCGCCGAGGTCGGCACCTACCTGCAAGA GCAACTGCGCGCGACCTTCACCGATCACCCGCTGGTGGGCGAGGTGCGCGGCAAAGGCCTGATCGCCGCGCTCGAACTGG TTTCAAACAAGACCACCGGCGCCACCATCGCAGGCGGCAAGGGTGGTGCTGCCGCAGTCAAAGCCTGCCAGACCGAGGGC GTGATCCTGCGCGCGGTGGCCGGCAATGCGCTGGCCTTCTGCCCGCCGCTCATCATCACAAAGCCAGAGGTGGACGAGAT GCTCAAACGCACCAAGGCCGGTGTCGATGCTGCCTACGAGGCCCTGAGATCCGAAGGCCTCCTGAACAGCTGA
Upstream 100 bases:
>100_bases TATTGAACAAAGACTTGCGACTTTTGATCAAAACCCTTTGACTGCCCCGCAAATGCACGCCAATCCTAACGCCAACCTGT GACAGCAAAGGATTGGCCAG
Downstream 100 bases:
>100_bases TCCAAAACAAAAGGCGCCGCGATCGAATCGGGCGCCTTTTCATCTTCTTACAAATATCCCGGAGCGCGAGGCAGCGCCTC GCAACAGGCTTTTCCCATAG
Product: aminotransferase
Products: L-glutamate; N2-succinylglutamic-semialdehyde [C]
Alternate protein names: NA
Number of amino acids: Translated: 450; Mature: 449
Protein sequence:
>450_residues MASVIYPTTNFTATEQLCITHGEGIYVYDDTGKQYIEGLAGLWCTSLGYSNTEVVEAITEQLKRLPFQHTFGGKTHAPVM ELAEKLKAMVPVEDAYFFFGNSGSDANDSHYKMLRYYFNAIGKPHKRKIITRERGYHGVTVAAGSLTSLPANLAHFDAPL EALSILRTDAPHYYTGRQGNETEAQFVERILQNLEDQILAEDPDTIAAMIIEPITGASGVIVPPEGYYEGLQALLRKHGI LIWADEVICGFGRTGADFGCTTMGIKPDLMTFAKQLSSAYFPISASVIPGWMYKAMVDQTNEVGVFGHGYTYSGHPAACA AALKTLEIYERDKIFDHAAEVGTYLQEQLRATFTDHPLVGEVRGKGLIAALELVSNKTTGATIAGGKGGAAAVKACQTEG VILRAVAGNALAFCPPLIITKPEVDEMLKRTKAGVDAAYEALRSEGLLNS
Sequences:
>Translated_450_residues MASVIYPTTNFTATEQLCITHGEGIYVYDDTGKQYIEGLAGLWCTSLGYSNTEVVEAITEQLKRLPFQHTFGGKTHAPVM ELAEKLKAMVPVEDAYFFFGNSGSDANDSHYKMLRYYFNAIGKPHKRKIITRERGYHGVTVAAGSLTSLPANLAHFDAPL EALSILRTDAPHYYTGRQGNETEAQFVERILQNLEDQILAEDPDTIAAMIIEPITGASGVIVPPEGYYEGLQALLRKHGI LIWADEVICGFGRTGADFGCTTMGIKPDLMTFAKQLSSAYFPISASVIPGWMYKAMVDQTNEVGVFGHGYTYSGHPAACA AALKTLEIYERDKIFDHAAEVGTYLQEQLRATFTDHPLVGEVRGKGLIAALELVSNKTTGATIAGGKGGAAAVKACQTEG VILRAVAGNALAFCPPLIITKPEVDEMLKRTKAGVDAAYEALRSEGLLNS >Mature_449_residues ASVIYPTTNFTATEQLCITHGEGIYVYDDTGKQYIEGLAGLWCTSLGYSNTEVVEAITEQLKRLPFQHTFGGKTHAPVME LAEKLKAMVPVEDAYFFFGNSGSDANDSHYKMLRYYFNAIGKPHKRKIITRERGYHGVTVAAGSLTSLPANLAHFDAPLE ALSILRTDAPHYYTGRQGNETEAQFVERILQNLEDQILAEDPDTIAAMIIEPITGASGVIVPPEGYYEGLQALLRKHGIL IWADEVICGFGRTGADFGCTTMGIKPDLMTFAKQLSSAYFPISASVIPGWMYKAMVDQTNEVGVFGHGYTYSGHPAACAA ALKTLEIYERDKIFDHAAEVGTYLQEQLRATFTDHPLVGEVRGKGLIAALELVSNKTTGATIAGGKGGAAAVKACQTEGV ILRAVAGNALAFCPPLIITKPEVDEMLKRTKAGVDAAYEALRSEGLLNS
Specific function: Catalyzes The Transmination Of N(2)-Succinylornithine And Alpha-Ketoglutarate Into N(2)-Succinylglutamate Semialdehyde And Glutamate. Can Also Act As A Acetylornithine Aminotransferase. [C]
COG id: COG0161
COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI13994255, Length=430, Percent_Identity=27.6744186046512, Blast_Score=150, Evalue=2e-36, Organism=Homo sapiens, GI24119277, Length=450, Percent_Identity=26.8888888888889, Blast_Score=147, Evalue=2e-35, Organism=Homo sapiens, GI4557809, Length=424, Percent_Identity=26.8867924528302, Blast_Score=140, Evalue=3e-33, Organism=Homo sapiens, GI37574042, Length=443, Percent_Identity=26.410835214447, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI226442705, Length=443, Percent_Identity=26.1851015801354, Blast_Score=131, Evalue=2e-30, Organism=Homo sapiens, GI226442709, Length=395, Percent_Identity=27.0886075949367, Blast_Score=123, Evalue=4e-28, Organism=Homo sapiens, GI284507298, Length=335, Percent_Identity=28.6567164179104, Blast_Score=122, Evalue=6e-28, Organism=Homo sapiens, GI188536080, Length=279, Percent_Identity=22.5806451612903, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI38679950, Length=279, Percent_Identity=22.5806451612903, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI38679946, Length=279, Percent_Identity=22.5806451612903, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1788044, Length=419, Percent_Identity=30.5489260143198, Blast_Score=155, Evalue=7e-39, Organism=Escherichia coli, GI145693181, Length=353, Percent_Identity=30.5949008498584, Blast_Score=151, Evalue=7e-38, Organism=Escherichia coli, GI1789016, Length=422, Percent_Identity=30.3317535545024, Blast_Score=145, Evalue=5e-36, Organism=Escherichia coli, GI1786991, Length=440, Percent_Identity=29.5454545454545, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI1789759, Length=410, Percent_Identity=26.5853658536585, Blast_Score=133, Evalue=2e-32, Organism=Escherichia coli, GI1787560, Length=426, Percent_Identity=28.4037558685446, Blast_Score=115, Evalue=5e-27, Organism=Caenorhabditis elegans, GI32564660, Length=431, Percent_Identity=30.8584686774942, Blast_Score=168, Evalue=4e-42, Organism=Caenorhabditis elegans, GI25144271, Length=420, Percent_Identity=27.6190476190476, Blast_Score=146, Evalue=2e-35, Organism=Caenorhabditis elegans, GI71992977, Length=439, Percent_Identity=25.5125284738041, Blast_Score=132, Evalue=4e-31, Organism=Caenorhabditis elegans, GI25144274, Length=338, Percent_Identity=28.698224852071, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17541228, Length=315, Percent_Identity=23.8095238095238, Blast_Score=72, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6324432, Length=447, Percent_Identity=26.1744966442953, Blast_Score=139, Evalue=1e-33, Organism=Saccharomyces cerevisiae, GI6323470, Length=435, Percent_Identity=25.5172413793103, Blast_Score=127, Evalue=3e-30, Organism=Saccharomyces cerevisiae, GI6324386, Length=436, Percent_Identity=27.0642201834862, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6321456, Length=414, Percent_Identity=23.9130434782609, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI161085790, Length=431, Percent_Identity=29.9303944315545, Blast_Score=151, Evalue=1e-36, Organism=Drosophila melanogaster, GI28574759, Length=422, Percent_Identity=30.5687203791469, Blast_Score=150, Evalue=2e-36, Organism=Drosophila melanogaster, GI21357415, Length=419, Percent_Identity=25.2983293556086, Blast_Score=134, Evalue=1e-31, Organism=Drosophila melanogaster, GI21356575, Length=431, Percent_Identity=25.9860788863109, Blast_Score=131, Evalue=1e-30, Organism=Drosophila melanogaster, GI281366494, Length=455, Percent_Identity=21.978021978022, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24667139, Length=455, Percent_Identity=21.978021978022, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24667143, Length=455, Percent_Identity=21.978021978022, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00202 Aminotran_3 [H]
EC number: 2.6.1.- [C]
Molecular weight: Translated: 48721; Mature: 48590
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASVIYPTTNFTATEQLCITHGEGIYVYDDTGKQYIEGLAGLWCTSLGYSNTEVVEAITE CCEEEECCCCCCCCHHEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH QLKRLPFQHTFGGKTHAPVMELAEKLKAMVPVEDAYFFFGNSGSDANDSHYKMLRYYFNA HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH IGKPHKRKIITRERGYHGVTVAAGSLTSLPANLAHFDAPLEALSILRTDAPHYYTGRQGN HCCCHHHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC ETEAQFVERILQNLEDQILAEDPDTIAAMIIEPITGASGVIVPPEGYYEGLQALLRKHGI CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCE LIWADEVICGFGRTGADFGCTTMGIKPDLMTFAKQLSSAYFPISASVIPGWMYKAMVDQT EEEECHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEECHHCCHHHHHHHHCCC NEVGVFGHGYTYSGHPAACAAALKTLEIYERDKIFDHAAEVGTYLQEQLRATFTDHPLVG CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE EVRGKGLIAALELVSNKTTGATIAGGKGGAAAVKACQTEGVILRAVAGNALAFCPPLIIT CCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHCCCCEEEEEECCCCHHHCCCCEEE KPEVDEMLKRTKAGVDAAYEALRSEGLLNS CCCHHHHHHHHHCCHHHHHHHHHHCCCCCC >Mature Secondary Structure ASVIYPTTNFTATEQLCITHGEGIYVYDDTGKQYIEGLAGLWCTSLGYSNTEVVEAITE CEEEECCCCCCCCHHEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH QLKRLPFQHTFGGKTHAPVMELAEKLKAMVPVEDAYFFFGNSGSDANDSHYKMLRYYFNA HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH IGKPHKRKIITRERGYHGVTVAAGSLTSLPANLAHFDAPLEALSILRTDAPHYYTGRQGN HCCCHHHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC ETEAQFVERILQNLEDQILAEDPDTIAAMIIEPITGASGVIVPPEGYYEGLQALLRKHGI CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCE LIWADEVICGFGRTGADFGCTTMGIKPDLMTFAKQLSSAYFPISASVIPGWMYKAMVDQT EEEECHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEECHHCCHHHHHHHHCCC NEVGVFGHGYTYSGHPAACAAALKTLEIYERDKIFDHAAEVGTYLQEQLRATFTDHPLVG CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE EVRGKGLIAALELVSNKTTGATIAGGKGGAAAVKACQTEGVILRAVAGNALAFCPPLIIT CCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHCCCCEEEEEECCCCHHHCCCCEEE KPEVDEMLKRTKAGVDAAYEALRSEGLLNS CCCHHHHHHHHHCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Pyridoxal Phosphate. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N-alpha-acetylornithine; 2-oxoglutarate [C]
Specific reaction: N-alpha-acetylornithine + 2-oxoglutarate = N-acetylglutamate semialdehyde + L-glutamate N2-succinylornithine + 2-oxoglutarate = N2-succinylglutamic-semialdehyde + L-glutamate [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]