| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is tag [H]
Identifier: 99081763
GI number: 99081763
Start: 2023619
End: 2024221
Strand: Reverse
Name: tag [H]
Synonym: TM1040_1922
Alternate gene names: 99081763
Gene position: 2024221-2023619 (Counterclockwise)
Preceding gene: 99081764
Following gene: 99081760
Centisome position: 63.24
GC content: 61.69
Gene sequence:
>603_bases ATGAGCCGCGTTGTTACAGGCGGGGATGGCCGCACGCGCTGCGCCTGGTCTGCCTCGGCCCCGGAGTTTGACGCCTACCA TGACACAGAGTGGGGTTTCCCCGTGGGGGATGACCGGCGGCTCTTTGAAAAGATCTGCCTTGAGAGTTTCCAATCTGGGC TGAGCTGGCGCACGATCCTAGCCAAGCGCGAGAATTTTCGCGCTGCCTTTGATGGTTTCGACTATCACGCGATGGCGGCC TACGGACCTGAAAAGGTCGCGGCGCTGCTGCAAGATGCGGGGATCATTCGTCATCGCGGCAAGATCGAGGCGGTGATCAA CAACGCAGCGCGTGCGGTGGAGATGGAGCAAAGCGAGGGCGCGCTCGCGGCGTTTTTCTGGCGTTACGAGGTGGAGACCC CACCCGAGCCGCAGACGGTCTCGACCTGTCCTGAATCGGTGGCCCTGTCAAAAGAGCTGAAGACGCGCGGCTGGAAATTT GTCGGACCTACGACCTGTTTTGCCTTCATGCAGGCCATGGGGCTGGTGAATGACCACGCGGAGGGCTGCTATTGCCGCCC GATCGCGGCCGCAGCTCGTCAGGGTTTTGCCAAACCGGTCTGA
Upstream 100 bases:
>100_bases CGACAGATCCTTTTGTGCGCGACGGGCTGGTTGCGGTGGATATCACCGCCTTCACCCCCTCTCAGGCGGATCCGCGGCTT TCATTCCTCAAGGTGGCGGC
Downstream 100 bases:
>100_bases TCAGCACGCCGAACTCCTGCGGTTTGAAGCCAAGGGATTAGAGACACGTCGAGGGTGTCATTTGAGGGTGTCGCTTTGTG CTGTGCCCAAAGCGACCCGC
Product: DNA-3-methyladenine glycosylase I
Products: NA
Alternate protein names: 3-methyladenine-DNA glycosylase I, constitutive; TAG I; DNA-3-methyladenine glycosidase I; DNA-3-methyladenine glycosylase I [H]
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MSRVVTGGDGRTRCAWSASAPEFDAYHDTEWGFPVGDDRRLFEKICLESFQSGLSWRTILAKRENFRAAFDGFDYHAMAA YGPEKVAALLQDAGIIRHRGKIEAVINNAARAVEMEQSEGALAAFFWRYEVETPPEPQTVSTCPESVALSKELKTRGWKF VGPTTCFAFMQAMGLVNDHAEGCYCRPIAAAARQGFAKPV
Sequences:
>Translated_200_residues MSRVVTGGDGRTRCAWSASAPEFDAYHDTEWGFPVGDDRRLFEKICLESFQSGLSWRTILAKRENFRAAFDGFDYHAMAA YGPEKVAALLQDAGIIRHRGKIEAVINNAARAVEMEQSEGALAAFFWRYEVETPPEPQTVSTCPESVALSKELKTRGWKF VGPTTCFAFMQAMGLVNDHAEGCYCRPIAAAARQGFAKPV >Mature_199_residues SRVVTGGDGRTRCAWSASAPEFDAYHDTEWGFPVGDDRRLFEKICLESFQSGLSWRTILAKRENFRAAFDGFDYHAMAAY GPEKVAALLQDAGIIRHRGKIEAVINNAARAVEMEQSEGALAAFFWRYEVETPPEPQTVSTCPESVALSKELKTRGWKFV GPTTCFAFMQAMGLVNDHAEGCYCRPIAAAARQGFAKPV
Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions [H]
COG id: COG2818
COG function: function code L; 3-methyladenine DNA glycosylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789971, Length=181, Percent_Identity=53.0386740331492, Blast_Score=189, Evalue=1e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005019 - InterPro: IPR011257 - InterPro: IPR004597 [H]
Pfam domain/function: PF03352 Adenine_glyco [H]
EC number: =3.2.2.20 [H]
Molecular weight: Translated: 22137; Mature: 22006
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVVTGGDGRTRCAWSASAPEFDAYHDTEWGFPVGDDRRLFEKICLESFQSGLSWRTIL CCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH AKRENFRAAFDGFDYHAMAAYGPEKVAALLQDAGIIRHRGKIEAVINNAARAVEMEQSEG HHHHCCHHHHCCCCCEEHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC ALAAFFWRYEVETPPEPQTVSTCPESVALSKELKTRGWKFVGPTTCFAFMQAMGLVNDHA CEEEEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHCCCC EGCYCRPIAAAARQGFAKPV CCEEECHHHHHHHCCCCCCC >Mature Secondary Structure SRVVTGGDGRTRCAWSASAPEFDAYHDTEWGFPVGDDRRLFEKICLESFQSGLSWRTIL CCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH AKRENFRAAFDGFDYHAMAAYGPEKVAALLQDAGIIRHRGKIEAVINNAARAVEMEQSEG HHHHCCHHHHCCCCCEEHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC ALAAFFWRYEVETPPEPQTVSTCPESVALSKELKTRGWKFVGPTTCFAFMQAMGLVNDHA CEEEEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHCCCC EGCYCRPIAAAARQGFAKPV CCEEECHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3536912; 3520491; 8041620; 9278503 [H]