Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081727

Identifier: 99081727

GI number: 99081727

Start: 1986308

End: 1987381

Strand: Reverse

Name: 99081727

Synonym: TM1040_1886

Alternate gene names: NA

Gene position: 1987381-1986308 (Counterclockwise)

Preceding gene: 99081728

Following gene: 99081725

Centisome position: 62.09

GC content: 63.31

Gene sequence:

>1074_bases
ATGTCGTTCCCGGCTGTTAGGCGCCTGTGCCTGCTGGCCGCTACGCTCGCCTTGCCGTCTGCGGGGCAGGCGGCGCTTGA
CCTGTGCAACGACACCACCGCGGCGCAGCGGGTGGCAATCGGCTTTCAGGAGGCGGGCGACTGGACCTCAAAAGGCTGGT
GGGATCTGCCTGCTGGCAGCTGTACAGAGGTGCTCTCTTCCGCGTCGACAAGCCGGTTTTATTATCTGCGGGTAGAGACC
GAGGGCTGGGCCTTCACCGATGACAGGCTTGGGTTTTGCGTTGCTGACACGGATTTTGAAATCAAGGGCGAAGATGGGTG
CGCGCGCCGTGGCTTTCGCCAGGAGAATTTCGCACGGATCGACACCAGGGGCGCCGCTGCACCCGACCCAACAGCCCAGA
CGCGGCCAGCCGCAGATCCGGACACTGGGTCCGACGCCGCGCGCAGGACTTTTACACACCACCTCAGCGCCCATCTCACT
CCGATCAAATCCGACGTCCCGGCGCGCCATGTGGTTCAGTCCGGGTTCAGCACCAAAGCCGTGTTTCAAGGCTGTGATGC
GGAAACCACCGCCTATGCCAGCTTTTGCACCTTCATCGGCGCCGGGCGGCGCTATCTGGTTTATGACGACGGGCGCACCT
CCGCCGCGCTCTGGCAGGAGATCCAGCAAGCCATCCGCGGGCGACGCTACACGCTCGAGGGTTTGCGAGAGGATCTTTTT
GACACCACGTCAGAACTGGTTCTGCGCGCCATCCGACCAGAGCCCGAGGATCGCTCGGATCAGCTCTTGGCCAGCCTGCA
GGGTCTCTGGCGCTCCACCATCGATCCCAATGACAGCTTTCGCGTCAGCGGGGCCGAGCGCATAAACGCCTATGCCGGGG
CGGAAACATCGGTCGAATACCTCTCATTGCACAAACCCTGCGCCGAGGCGGGCGACGTGGGTCCCTTCCTTTTTACCTGG
GACAACAATTCCGGCACCAGCCTGTGCTACGCCATTGCCCGCCTCACTGACACCGAACTGGCGCTGATCTACCTTCCGCG
CGGGACCGAACTGGTCTACCGCCGCGAGGGCTGA

Upstream 100 bases:

>100_bases
AATATCATGGAAAAAGCCCGTTAAGGGCCGCTGCACCTGTCGTCAGAGTGTTACACTTCTGTCATAGATGTTTGCATCGT
GATGTACAAAATGATCCCTC

Downstream 100 bases:

>100_bases
GCCCGCGGCCTTCTTCTAACCTCAAATATCCCGGGGTCCGGGGCAGCGCCCCGGCGCATGGGCTGCGCCCTGCGCTTAGG
CCGCCAGCGCGCGCGAGGTG

Product: integral membrane protein-like

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGSCTEVLSSASTSRFYYLRVET
EGWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARIDTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLT
PIKSDVPARHVVQSGFSTKAVFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALWQEIQQAIRGRRYTLEGLREDLF
DTTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSFRVSGAERINAYAGAETSVEYLSLHKPCAEAGDVGPFLFTW
DNNSGTSLCYAIARLTDTELALIYLPRGTELVYRREG

Sequences:

>Translated_357_residues
MSFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGSCTEVLSSASTSRFYYLRVET
EGWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARIDTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLT
PIKSDVPARHVVQSGFSTKAVFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALWQEIQQAIRGRRYTLEGLREDLF
DTTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSFRVSGAERINAYAGAETSVEYLSLHKPCAEAGDVGPFLFTW
DNNSGTSLCYAIARLTDTELALIYLPRGTELVYRREG
>Mature_356_residues
SFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGSCTEVLSSASTSRFYYLRVETE
GWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARIDTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLTP
IKSDVPARHVVQSGFSTKAVFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALWQEIQQAIRGRRYTLEGLREDLFD
TTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSFRVSGAERINAYAGAETSVEYLSLHKPCAEAGDVGPFLFTWD
NNSGTSLCYAIARLTDTELALIYLPRGTELVYRREG

Specific function: Unknown

COG id: COG5480

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39201; Mature: 39070

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGS
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHCCHHHCCCCCCCCCEECCCCH
CTEVLSSASTSRFYYLRVETEGWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARI
HHHHHHCCCCCEEEEEEEECCCCEEECCCCEEEEECCCEEEECCCCHHHCCCCCCCCEEE
DTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLTPIKSDVPARHVVQSGFSTKA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHH
VFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALWQEIQQAIRGRRYTLEGLREDLF
HHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEHHHHHHHHH
DTTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSFRVSGAERINAYAGAETSVEY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHCCCCCCHHH
LSLHKPCAEAGDVGPFLFTWDNNSGTSLCYAIARLTDTELALIYLPRGTELVYRREG
HHHHCCHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEECC
>Mature Secondary Structure 
SFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGS
CCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHCCHHHCCCCCCCCCEECCCCH
CTEVLSSASTSRFYYLRVETEGWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARI
HHHHHHCCCCCEEEEEEEECCCCEEECCCCEEEEECCCEEEECCCCHHHCCCCCCCCEEE
DTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLTPIKSDVPARHVVQSGFSTKA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHH
VFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALWQEIQQAIRGRRYTLEGLREDLF
HHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEHHHHHHHHH
DTTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSFRVSGAERINAYAGAETSVEY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHCCCCCCHHH
LSLHKPCAEAGDVGPFLFTWDNNSGTSLCYAIARLTDTELALIYLPRGTELVYRREG
HHHHCCHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA