| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081672
Identifier: 99081672
GI number: 99081672
Start: 1927865
End: 1928956
Strand: Reverse
Name: 99081672
Synonym: TM1040_1831
Alternate gene names: NA
Gene position: 1928956-1927865 (Counterclockwise)
Preceding gene: 99081674
Following gene: 99081669
Centisome position: 60.26
GC content: 63.19
Gene sequence:
>1092_bases ATGAAGACATTTCTGCCAGCCGTTGCCCGTTCGATATCTGTGATCCTCTGCCTTGGCGGTCCATTTGGCGTGATCCCCGC GCCACTGGCGGCCCAGTCTGAGGCTCAATCGGAGGCCCAATCTGAAACCCAGTCGGAGATTGAGGTTGCAGAGTTTCCCT ATGTCACGCTCCGGAACCGGACCGGATCTGATGATCCGGCGGAGTTCTACGCAGGTGAGCGCAGTGATCCCAAAGCCGGC CGCTGTCGCGTCGAAGAACTCGACCTTGGCGTGCTTGCGCCCCTTGCCGGTGTCGCTCCGAATTTCCTGCGCGAGGAGCT GTTGCGCGTTCAGGCCATAGAGGAGGCCCCCACCGGCGCCATTCTGGACCAGCTCGAAGCGACCGCCGGGGCACAGGGGC CTGCGCTCTATGTCCATGGCTACTACATCAGTTTTGAAAAAGGCTGCCGCCGGGCTGCGCTGTTGCAGCAGAACGCGGAC CTTGAGGGGCGGCTTTTGTGGTTCAGCTGGCCCTCGGATGGGGCCGCCGCCTATTACACGCACGATGAGGTCGATCTCTA TTGGAGCCTGCCGGACCTCGCGGACACGATTATCGAATTACACGAGCGCTTTGGCCCCGGCGAGGTTGCGGTCATGGGGC ACAGCCTCGGGGCGCGCGGGGTCGTGCTGGCGCTGGCCGAGGTGGCCAATCGGCGCCCCGATATGCAGCTGGGTCAGGTC GTGCTGCTGGCGCCGGATATGGACTTTGGGATCTTTGAACGCATCCTGCCACGCATTCGCCCAATCGCAGAAAACCTGAC CATCTATGTCACCAGCGGTGACCGACCGCTTGCGCTTTCGGCGCAAGTGCATGGCTACCCGCGGCTCGGGGAGGCGGGAA ACCCGGTGTCGCGTCTCACGGGCGTCGAGGTGATCGATCTGAGCGACTTGCCCAGCGAAGGCCCGACGGGGCACCTCTAT CATATCTACAGCCAGATCGTGGGCGCGGATCTGAGCCGGCTTTTGCGCAGCGGCGAGGGGGCGTCCGAGCGTCCGGGCCT TGTGGCTCAGAGCAAAAACCTATGGCGCCTCAGGCCTGAAAAACGCGAGTAG
Upstream 100 bases:
>100_bases TGGCATAGCTTGGCTGCGCGGGCAGGCGCTGTTGGCTGAGAACAACCCTAAGCTGCGAAAGAACTTTCTAGGTTGGATCA GTCTGACGTATAAGCGGAGC
Downstream 100 bases:
>100_bases TTGCGCAATCCCCGCGGGGCCAGCGCCAACAGGGCCTCAAGAGGCCAGCGCCTCAGTGGATGATGTGCTTGAGATTGGCG AGCAGCAGGCCGACCCCGCC
Product: protein of unknown function DUF900, hydrolase-like
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 363
Protein sequence:
>363_residues MKTFLPAVARSISVILCLGGPFGVIPAPLAAQSEAQSEAQSETQSEIEVAEFPYVTLRNRTGSDDPAEFYAGERSDPKAG RCRVEELDLGVLAPLAGVAPNFLREELLRVQAIEEAPTGAILDQLEATAGAQGPALYVHGYYISFEKGCRRAALLQQNAD LEGRLLWFSWPSDGAAAYYTHDEVDLYWSLPDLADTIIELHERFGPGEVAVMGHSLGARGVVLALAEVANRRPDMQLGQV VLLAPDMDFGIFERILPRIRPIAENLTIYVTSGDRPLALSAQVHGYPRLGEAGNPVSRLTGVEVIDLSDLPSEGPTGHLY HIYSQIVGADLSRLLRSGEGASERPGLVAQSKNLWRLRPEKRE
Sequences:
>Translated_363_residues MKTFLPAVARSISVILCLGGPFGVIPAPLAAQSEAQSEAQSETQSEIEVAEFPYVTLRNRTGSDDPAEFYAGERSDPKAG RCRVEELDLGVLAPLAGVAPNFLREELLRVQAIEEAPTGAILDQLEATAGAQGPALYVHGYYISFEKGCRRAALLQQNAD LEGRLLWFSWPSDGAAAYYTHDEVDLYWSLPDLADTIIELHERFGPGEVAVMGHSLGARGVVLALAEVANRRPDMQLGQV VLLAPDMDFGIFERILPRIRPIAENLTIYVTSGDRPLALSAQVHGYPRLGEAGNPVSRLTGVEVIDLSDLPSEGPTGHLY HIYSQIVGADLSRLLRSGEGASERPGLVAQSKNLWRLRPEKRE >Mature_363_residues MKTFLPAVARSISVILCLGGPFGVIPAPLAAQSEAQSEAQSETQSEIEVAEFPYVTLRNRTGSDDPAEFYAGERSDPKAG RCRVEELDLGVLAPLAGVAPNFLREELLRVQAIEEAPTGAILDQLEATAGAQGPALYVHGYYISFEKGCRRAALLQQNAD LEGRLLWFSWPSDGAAAYYTHDEVDLYWSLPDLADTIIELHERFGPGEVAVMGHSLGARGVVLALAEVANRRPDMQLGQV VLLAPDMDFGIFERILPRIRPIAENLTIYVTSGDRPLALSAQVHGYPRLGEAGNPVSRLTGVEVIDLSDLPSEGPTGHLY HIYSQIVGADLSRLLRSGEGASERPGLVAQSKNLWRLRPEKRE
Specific function: Unknown
COG id: COG4782
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39447; Mature: 39447
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTFLPAVARSISVILCLGGPFGVIPAPLAAQSEAQSEAQSETQSEIEVAEFPYVTLRNR CCCHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCEEEEECC TGSDDPAEFYAGERSDPKAGRCRVEELDLGVLAPLAGVAPNFLREELLRVQAIEEAPTGA CCCCCCHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH ILDQLEATAGAQGPALYVHGYYISFEKGCRRAALLQQNADLEGRLLWFSWPSDGAAAYYT HHHHHHHHCCCCCCEEEEEEEEEEHHHCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEEE HDEVDLYWSLPDLADTIIELHERFGPGEVAVMGHSLGARGVVLALAEVANRRPDMQLGQV CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCE VLLAPDMDFGIFERILPRIRPIAENLTIYVTSGDRPLALSAQVHGYPRLGEAGNPVSRLT EEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHC GVEVIDLSDLPSEGPTGHLYHIYSQIVGADLSRLLRSGEGASERPGLVAQSKNLWRLRPE CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEECCCC KRE CCC >Mature Secondary Structure MKTFLPAVARSISVILCLGGPFGVIPAPLAAQSEAQSEAQSETQSEIEVAEFPYVTLRNR CCCHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCEEEEECC TGSDDPAEFYAGERSDPKAGRCRVEELDLGVLAPLAGVAPNFLREELLRVQAIEEAPTGA CCCCCCHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH ILDQLEATAGAQGPALYVHGYYISFEKGCRRAALLQQNADLEGRLLWFSWPSDGAAAYYT HHHHHHHHCCCCCCEEEEEEEEEEHHHCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEEE HDEVDLYWSLPDLADTIIELHERFGPGEVAVMGHSLGARGVVLALAEVANRRPDMQLGQV CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCE VLLAPDMDFGIFERILPRIRPIAENLTIYVTSGDRPLALSAQVHGYPRLGEAGNPVSRLT EEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHC GVEVIDLSDLPSEGPTGHLYHIYSQIVGADLSRLLRSGEGASERPGLVAQSKNLWRLRPE CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEECCCC KRE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA