| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081611
Identifier: 99081611
GI number: 99081611
Start: 1861967
End: 1862881
Strand: Reverse
Name: 99081611
Synonym: TM1040_1770
Alternate gene names: NA
Gene position: 1862881-1861967 (Counterclockwise)
Preceding gene: 99081635
Following gene: 99081610
Centisome position: 58.2
GC content: 61.53
Gene sequence:
>915_bases ATGACAACAGCAGGGTTTCAATCCATCGACGCGGTTCAGTCCGAGCTGTCCGAGGCGGGCTATGTCTGCGGGCGCGCCCT GGCGACGGTGGTGTTCCTCTCCACACGCCTTGGACGGCCCTTGTTCCTTGAAGGTGAGGCCGGCGTCGGCAAAACCGAGA TCGCAAAGGCGCTGGCGGCGGTGACGGGCCGGCCATTGATCCGGCTGCAGTGCTACGAGGGTCTGGACGCCGCAAGCGCC GTCTACGAGTGGAATTTTGCAGCGCAGATGATGGCGATCCGCATGGCCGAAAGCGCGGGTCAATCTGACCGCGAGGCGTT GCAGGCCGAACTCTTCTCGCAGGACTACCTGATCGCGCGCCCCCTGTTGCAAGCCATGCAACCCGATGCGCGCGGCACTC CCATTCTTCTGATTGATGAGTTGGACCGCACCGATGCTCCGTTTGAGGCTTTTCTTCTTGAGGCCCTGTCAGATTTCCAG GTCACGATCCCGGAGCTTGGCACAATCAGGGCCCCGGAGCCGCCGATGGTGATCCTGACCTCGAACCGCACCCGCGAGGT CCATGATGCGCTCAAACGGCGCTGCCTCTATCATTGGGTGGACTACCCCGATTTTGACCGTGAACTGGAAATCCTGACGG CTCAGGTGCCAACGGCAAGCGAGGCCCTCAGCCGTCAGGTGGTCGCCTTCGTTCAGAGCCTGCGCACCGAGGATCTCTTT AAAAAGCCCGGGGTTGCAGAGACAATCGACTGGGCCAACTGCCTGCTGGCGCTGGATGTGGTGAATCTCAGCCCCGAGAC GATCGCCGACACGTTGGGCGCGCTTCTGAAATATCAGGATGACATTGCGCGCCTGCAGGGATCAGAGGCCAAGCGCCTTC TGGATGAGGCCCGTTCCTTGCTTCAGGAGCACTGA
Upstream 100 bases:
>100_bases TTGCGCCCAACATGTTGCATGCGCTCTGCGGTCACACTGCTTGACGCTGAGGGCTCCTCATGCCCTCTTGGGACGAGCAG TGCGCAAGGCGGGGGATCTC
Downstream 100 bases:
>100_bases CATGAGGTTTCTTCTAACACCAAATATCCTGGGGGTCTGGGGGCAAAGCCCCCAGCGAGGCTGATGGTTGAATACCCCTC GCTTGCGATCTCGGACGATC
Product: ATPase
Products: NA
Alternate protein names: ATPase AAA Family; AAA ATPase Central Domain Protein; MoxR-Like ATPase; AAA_5 ATPase; AAA Family ATPase; ATPase Central Domain-Containing Protein; AAA ATPase; ATPase Associated With Various Cellular Activities; Carbon Monoxide Dehydrogenase D Protein; Oxidoreductase; ATPase AAA Family Protein; MoxR Family ATPase; ATP-Dependent Protease; ATPase Aaa Family; Aaa ATPase; ATPase-Like Protein; Chaperone ClpB; Oligopeptide ABC Transporter; Membrane Oxidoreductase; AAA ATPase Central RegionATPase; Carbon Monoxide Dehydrogenase CoxD Accessory Protein; ATP-Dependent Protease LA Protein; MoxR-Like ATPases; CoxD-Like Protein; ATP-Dependent Protease Subunit; ATPase Associated With Various Cellular; Carbon Monoxide Dehydrogenase Accesory Protein; ClpA/ClpB Family Protein; AAA ATPase Family Protein; MoxR-Like ATPase CoxD; ATPase Protein
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MTTAGFQSIDAVQSELSEAGYVCGRALATVVFLSTRLGRPLFLEGEAGVGKTEIAKALAAVTGRPLIRLQCYEGLDAASA VYEWNFAAQMMAIRMAESAGQSDREALQAELFSQDYLIARPLLQAMQPDARGTPILLIDELDRTDAPFEAFLLEALSDFQ VTIPELGTIRAPEPPMVILTSNRTREVHDALKRRCLYHWVDYPDFDRELEILTAQVPTASEALSRQVVAFVQSLRTEDLF KKPGVAETIDWANCLLALDVVNLSPETIADTLGALLKYQDDIARLQGSEAKRLLDEARSLLQEH
Sequences:
>Translated_304_residues MTTAGFQSIDAVQSELSEAGYVCGRALATVVFLSTRLGRPLFLEGEAGVGKTEIAKALAAVTGRPLIRLQCYEGLDAASA VYEWNFAAQMMAIRMAESAGQSDREALQAELFSQDYLIARPLLQAMQPDARGTPILLIDELDRTDAPFEAFLLEALSDFQ VTIPELGTIRAPEPPMVILTSNRTREVHDALKRRCLYHWVDYPDFDRELEILTAQVPTASEALSRQVVAFVQSLRTEDLF KKPGVAETIDWANCLLALDVVNLSPETIADTLGALLKYQDDIARLQGSEAKRLLDEARSLLQEH >Mature_303_residues TTAGFQSIDAVQSELSEAGYVCGRALATVVFLSTRLGRPLFLEGEAGVGKTEIAKALAAVTGRPLIRLQCYEGLDAASAV YEWNFAAQMMAIRMAESAGQSDREALQAELFSQDYLIARPLLQAMQPDARGTPILLIDELDRTDAPFEAFLLEALSDFQV TIPELGTIRAPEPPMVILTSNRTREVHDALKRRCLYHWVDYPDFDRELEILTAQVPTASEALSRQVVAFVQSLRTEDLFK KPGVAETIDWANCLLALDVVNLSPETIADTLGALLKYQDDIARLQGSEAKRLLDEARSLLQEH
Specific function: Unknown
COG id: COG0714
COG function: function code R; MoxR-like ATPases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33556; Mature: 33424
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAGFQSIDAVQSELSEAGYVCGRALATVVFLSTRLGRPLFLEGEAGVGKTEIAKALAA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH VTGRPLIRLQCYEGLDAASAVYEWNFAAQMMAIRMAESAGQSDREALQAELFSQDYLIAR HCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHH PLLQAMQPDARGTPILLIDELDRTDAPFEAFLLEALSDFQVTIPELGTIRAPEPPMVILT HHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCCEEEEE SNRTREVHDALKRRCLYHWVDYPDFDRELEILTAQVPTASEALSRQVVAFVQSLRTEDLF CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH KKPGVAETIDWANCLLALDVVNLSPETIADTLGALLKYQDDIARLQGSEAKRLLDEARSL HCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH LQEH HHCC >Mature Secondary Structure TTAGFQSIDAVQSELSEAGYVCGRALATVVFLSTRLGRPLFLEGEAGVGKTEIAKALAA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH VTGRPLIRLQCYEGLDAASAVYEWNFAAQMMAIRMAESAGQSDREALQAELFSQDYLIAR HCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHH PLLQAMQPDARGTPILLIDELDRTDAPFEAFLLEALSDFQVTIPELGTIRAPEPPMVILT HHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCCEEEEE SNRTREVHDALKRRCLYHWVDYPDFDRELEILTAQVPTASEALSRQVVAFVQSLRTEDLF CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH KKPGVAETIDWANCLLALDVVNLSPETIADTLGALLKYQDDIARLQGSEAKRLLDEARSL HCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH LQEH HHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA