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The map label for this gene is ygcA [C]

Identifier: 99081590

GI number: 99081590

Start: 1842361

End: 1843008

Strand: Direct

Name: ygcA [C]

Synonym: TM1040_1749

Alternate gene names: 99081590

Gene position: 1842361-1843008 (Clockwise)

Preceding gene: 99081588

Following gene: 99081592

Centisome position: 57.56

GC content: 56.94

Gene sequence:

>648_bases
ATGGCCGCTTCTTCAAAGGATGCCGCGTTCTGGAGCAAGATCTCGCGCAAGTATGCGGCGGACCCGATCCGCAACATGGA
CGGCTATCTGCAAACGCTTGATCGCACAAAATCCTACCTGAAGCCGGAGGACCATGTGCTCGAGATCGGCTGCGGCACGG
GATCGACCGCTTTGCTGCTGGCGCCGCATGTTGCGCATATCACCGGCACGGATCTGGCACCGGGCATGATCGAAATTGCT
GCCGAGAAACGTGCGAAAGAAGGGCTCGAAAACGTGACGTTCAAAGTGGCCGAGACGCTCGACCACAACCCTCAGGACGG
CGCCTATGACGCCATTTTGGCGCATAACCTGCTGCATCTGTTGCATGATCTTGATCAATCGCTGCAGCGGATCGCTGCGC
TGACCAAAACCGGCGGGGTCTTTATCTCAAAAACTGTCTGCGCCCCAAAAGCCGGTGGCATCAAATACGCGCTCATTCGT
GCGCTCGCGATCCCGCTGATGCAGCGGATCGGAAAAGCGCCCTATGTGAATTTCATTTCGGTGCCGGACCTTGAGCGTCG
TATTGAACGTGCCGGATTCGAGATTTGCGAGGTGATTTCCCAGCCCGGACTGATGCAGAGCCACTATGTTGTGGCGCGCA
AACTCTAA

Upstream 100 bases:

>100_bases
TCATGCATAAATGCATAACCATCCTGCAAAGCGGATCAATTCCATAAAACTGTGTTTGGATGTAAAGGTTGCTCTGACAC
CACAAACGGAAAGTAGAGAT

Downstream 100 bases:

>100_bases
CGCCTTTCCTGCGCCAGCCGCTGAAGCCACCGAACGCAGGCGCATCGCTTGCTGCGATATAGAGGCGGGCGGTGCCCCTA
TCCGAGGCACCGCCCAATGG

Product: methyltransferase type 12

Products: NA

Alternate protein names: Methyltransferase; Methyltransferase UbiE/COQ5 Family; Methyltransferase Domain Family; SAM-Dependent Methyltransferase; UbiE/COQ5 Family Methlytransferase

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MAASSKDAAFWSKISRKYAADPIRNMDGYLQTLDRTKSYLKPEDHVLEIGCGTGSTALLLAPHVAHITGTDLAPGMIEIA
AEKRAKEGLENVTFKVAETLDHNPQDGAYDAILAHNLLHLLHDLDQSLQRIAALTKTGGVFISKTVCAPKAGGIKYALIR
ALAIPLMQRIGKAPYVNFISVPDLERRIERAGFEICEVISQPGLMQSHYVVARKL

Sequences:

>Translated_215_residues
MAASSKDAAFWSKISRKYAADPIRNMDGYLQTLDRTKSYLKPEDHVLEIGCGTGSTALLLAPHVAHITGTDLAPGMIEIA
AEKRAKEGLENVTFKVAETLDHNPQDGAYDAILAHNLLHLLHDLDQSLQRIAALTKTGGVFISKTVCAPKAGGIKYALIR
ALAIPLMQRIGKAPYVNFISVPDLERRIERAGFEICEVISQPGLMQSHYVVARKL
>Mature_214_residues
AASSKDAAFWSKISRKYAADPIRNMDGYLQTLDRTKSYLKPEDHVLEIGCGTGSTALLLAPHVAHITGTDLAPGMIEIAA
EKRAKEGLENVTFKVAETLDHNPQDGAYDAILAHNLLHLLHDLDQSLQRIAALTKTGGVFISKTVCAPKAGGIKYALIRA
LAIPLMQRIGKAPYVNFISVPDLERRIERAGFEICEVISQPGLMQSHYVVARKL

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23472; Mature: 23341

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASSKDAAFWSKISRKYAADPIRNMDGYLQTLDRTKSYLKPEDHVLEIGCGTGSTALLL
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEE
APHVAHITGTDLAPGMIEIAAEKRAKEGLENVTFKVAETLDHNPQDGAYDAILAHNLLHL
CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LHDLDQSLQRIAALTKTGGVFISKTVCAPKAGGIKYALIRALAIPLMQRIGKAPYVNFIS
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
VPDLERRIERAGFEICEVISQPGLMQSHYVVARKL
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
AASSKDAAFWSKISRKYAADPIRNMDGYLQTLDRTKSYLKPEDHVLEIGCGTGSTALLL
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEE
APHVAHITGTDLAPGMIEIAAEKRAKEGLENVTFKVAETLDHNPQDGAYDAILAHNLLHL
CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LHDLDQSLQRIAALTKTGGVFISKTVCAPKAGGIKYALIRALAIPLMQRIGKAPYVNFIS
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
VPDLERRIERAGFEICEVISQPGLMQSHYVVARKL
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA