The gene/protein map for NC_008044 is currently unavailable.
Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081532

Identifier: 99081532

GI number: 99081532

Start: 1784602

End: 1786695

Strand: Direct

Name: 99081532

Synonym: TM1040_1691

Alternate gene names: NA

Gene position: 1784602-1786695 (Clockwise)

Preceding gene: 99081531

Following gene: 99081533

Centisome position: 55.75

GC content: 61.13

Gene sequence:

>2094_bases
ATGACCGCACAGCTTCCCCTTGAATTCCTTGACGCAGCGCGGGTTTACGAGCGCCCCTTGATTGTCGACAGCTTTGCGGG
CGGCGGCGGGGCCAGCACTGGCATTGAGCTCGCTCTCGACCGTAGTCCGGATATCGCGATCAATCATGATCCGGCAGCGC
TTGCGCTACATGAAGCGAACCACCCCGAGGCGTTACACCTTTCGGAGAACGTATATCGCATTGACCCGCTTGAGCATTTG
AGTGGAAAGCACATCGGCCTGATGTGGTTCAGCCCCGATTGCAAGCACTTCTCCAAGGCCAAGGGCGGTAAGCCGGTAGC
TCGCAACATCCGCGATCTCGCTTGGATTATTCCGGGCTGGATCGAAAGGATTCAGAAGAGCGGCGGCAAGGTCGACGTAG
TTCTTATGGAGAATGTCGAGGAGTTCGCTGGCTGGGGGCCACTGATCGAGACCGACAAAGGCCTGATGCCGTGCCCAGAG
CGCAAGGGGGAAACGTTCGAAGCGTGGTGCAAAAAGATCCGCAGCCTTGGTGGCAAGCTAGAGCGAAGAGAACTCCGAGG
CTGTGACTACGGAGCGCCAACAATTCGCAAGCGCCTATTTGTGGCGATCCGCTTTGATGGGGAGCCTGTCAGTTGGCCCA
CGCCCACACACGGCGATCCCAACAGCGCCGAGGTGAAGTCGGGCAAGCTCAAACCGTGGCGAACCGCAGCAGAATGTATC
GACTGGAGTCACCCTTGCCCCTCGATTTTCGACAGCAAGGCCGAGATCATGGAAAAATACGGACTGCGCTCGGTGCGCCC
TCTGGCCCACAACACGCTTGCGCGCGTGGCTCGTGGCCTGCATCGCTATGTTCTGCAGGCTGAGCGTCCGTTTCTGGTGA
ACCTGACCCACGGCGGGCGCGTCGAGGACGTCGCAGAACCCTTCAAGACAATCACGGGGGCCAACCGGGGCGAAAAGGCG
ATTGTTGCGCCCTCCCTTGTCAGCGTCGCGCATGGCGATAGCGGCGGTCGTCGAAAATACCCACTGACCGATCCATATGG
CGTTGTAACGGCCGGAGGCGTTTCAAACGCACTCATTGCCCCCAGCATTGCACGTTTCACCACTGGCGGAACCGGACACC
AAATCAAATCTCCCCTCGCAACGGTCCCGGCAAACAGCTTCATCAAGCGCCCAGGTGGTGCCGCCCCGCTTGGAGTGCTG
GCACCGTACCTTGCCACCATGCGCAACAGCCTGAAGCCTTGGCAGGAGGTAACGAAGCCCACCCACACCGTCACGGCGGG
CGGCGCAGGCCTTACGCTTTGCGCGCCCCACCTGATGAGCCTGAAAGGCACTGCGCGCCGGGATCGTGCTGCAGACGCAC
CTCATCCGACCGTTCTGGCCGGAGGCGGCCACTCCGCTCTCATGGCCCCCGTCTTGACCTACGCACAACAGGGCGGAGCC
AATCGCTCTATGCTGGACCCGCATCATACGATCTGCGCGAGCAAAAAGGACCAGAACAGCCTGTTCTCGGCCTTTCTCGC
CCAGCAAAACGGCGGACCGCGCATGGCGGGGCACAGTGGCCATGATCCCCGCGAGCCGATTTCCACCGTCACCGGCAGCG
GGAGCCAGCAGACGCCGGTGGCCGCGTTCTTCGCCAAATATTACGGCACCGGTGATGGAGCGCGCGCGGACGCTCCGCTG
CACACTATCACAGTCAAGGATCGCATGGCGCATTGCCAAGCGGATGTGATCCCAGCTCCACCGTTCACTGACGCCCATAC
GGAGCGCGCCCGCCAAGTCGCAAGCCTGATGCGCGACCATGGCCTTTGGGATGAACGCGAGTTCGTCACACTCGAGATCG
AGGGGCAAGCTTTCATCATCGTAGATGTCGGTATGCGCATGCTCACCCCGCGAGAGCTCTTCAACGCCCAAGGCTTCCCT
GCAGACTACGTGATCGAGGGAATTTGGAAGCAGGAAAGCGATGACTGGACCTTTTCCACGTTCCCCAAGGACGTGCAGGT
CCGGTGCGTGGGCAATAGCGTCTGCCCACCAGTGGCCGAGGCGCTGGTGCGCGCCAACTGTTCGCACCTTATCGAGATGG
AGGACTCGCAGTGA

Upstream 100 bases:

>100_bases
AGAACGAAGCGGCCCGCCTATACAGCGAATGGCGCGCCTTACCGAAACCCCGTCCTGAGTTCCTTACCTGGGCACACACC
AAGCGAGAGAAGACCGCAGC

Downstream 100 bases:

>100_bases
GCCCGCAAACGCTCTTACGCCAGCGCATTGAGGCTCACCGTCGCGCGATACGATCCGGGGATCTCATCGAGATCAATCGC
ACGTGGGACGATCTGGAGCA

Product: C-5 cytosine-specific DNA methylase

Products: NA

Alternate protein names: Site-Specific DNA Methylase; DNA Cytosine Methyltransferase; Methylase; Cytosine-Specific Methylase; C-5 Cytosine-Specific DNA Methylase Family Protein; DNA-Methyltransferase; Prophage LambdaSo Type II DNA Methyltransferase; Prophage DNA Cytosine Methylase; DNA Methyltransferase; DNA Methylase; DNA Cytosine Methyltransferase Family Protein; C-5 Cytosine-Specific DNA Methylase Superfamily

Number of amino acids: Translated: 697; Mature: 696

Protein sequence:

>697_residues
MTAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEANHPEALHLSENVYRIDPLEHL
SGKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGWIERIQKSGGKVDVVLMENVEEFAGWGPLIETDKGLMPCPE
RKGETFEAWCKKIRSLGGKLERRELRGCDYGAPTIRKRLFVAIRFDGEPVSWPTPTHGDPNSAEVKSGKLKPWRTAAECI
DWSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGLHRYVLQAERPFLVNLTHGGRVEDVAEPFKTITGANRGEKA
IVAPSLVSVAHGDSGGRRKYPLTDPYGVVTAGGVSNALIAPSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVL
APYLATMRNSLKPWQEVTKPTHTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGA
NRSMLDPHHTICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPVAAFFAKYYGTGDGARADAPL
HTITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDHGLWDEREFVTLEIEGQAFIIVDVGMRMLTPRELFNAQGFP
ADYVIEGIWKQESDDWTFSTFPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ

Sequences:

>Translated_697_residues
MTAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEANHPEALHLSENVYRIDPLEHL
SGKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGWIERIQKSGGKVDVVLMENVEEFAGWGPLIETDKGLMPCPE
RKGETFEAWCKKIRSLGGKLERRELRGCDYGAPTIRKRLFVAIRFDGEPVSWPTPTHGDPNSAEVKSGKLKPWRTAAECI
DWSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGLHRYVLQAERPFLVNLTHGGRVEDVAEPFKTITGANRGEKA
IVAPSLVSVAHGDSGGRRKYPLTDPYGVVTAGGVSNALIAPSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVL
APYLATMRNSLKPWQEVTKPTHTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGA
NRSMLDPHHTICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPVAAFFAKYYGTGDGARADAPL
HTITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDHGLWDEREFVTLEIEGQAFIIVDVGMRMLTPRELFNAQGFP
ADYVIEGIWKQESDDWTFSTFPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ
>Mature_696_residues
TAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEANHPEALHLSENVYRIDPLEHLS
GKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGWIERIQKSGGKVDVVLMENVEEFAGWGPLIETDKGLMPCPER
KGETFEAWCKKIRSLGGKLERRELRGCDYGAPTIRKRLFVAIRFDGEPVSWPTPTHGDPNSAEVKSGKLKPWRTAAECID
WSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGLHRYVLQAERPFLVNLTHGGRVEDVAEPFKTITGANRGEKAI
VAPSLVSVAHGDSGGRRKYPLTDPYGVVTAGGVSNALIAPSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVLA
PYLATMRNSLKPWQEVTKPTHTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGAN
RSMLDPHHTICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPVAAFFAKYYGTGDGARADAPLH
TITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDHGLWDEREFVTLEIEGQAFIIVDVGMRMLTPRELFNAQGFPA
DYVIEGIWKQESDDWTFSTFPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ

Specific function: Unknown

COG id: COG0270

COG function: function code L; Site-specific DNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75570; Mature: 75439

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEAN
CCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCEEECCCCCEEEEECCC
HPEALHLSENVYRIDPLEHLSGKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGW
CCCEEEECCCEEEECCHHHCCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
IERIQKSGGKVDVVLMENVEEFAGWGPLIETDKGLMPCPERKGETFEAWCKKIRSLGGKL
HHHHHHCCCCEEEEEECCHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHH
ERRELRGCDYGAPTIRKRLFVAIRFDGEPVSWPTPTHGDPNSAEVKSGKLKPWRTAAECI
HHHHHCCCCCCCHHHCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
DWSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGLHRYVLQAERPFLVNLTHGGR
CCCCCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
VEDVAEPFKTITGANRGEKAIVAPSLVSVAHGDSGGRRKYPLTDPYGVVTAGGVSNALIA
HHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHC
PSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVLAPYLATMRNSLKPWQEVTKP
CHHHHHCCCCCCCHHCCCHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCC
THTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGA
CEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC
NRSMLDPHHTICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPV
CCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHH
AAFFAKYYGTGDGARADAPLHTITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDH
HHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
GLWDEREFVTLEIEGQAFIIVDVGMRMLTPRELFNAQGFPADYVIEGIWKQESDDWTFST
CCCCCCEEEEEEECCCEEEEEECCHHHCCHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEC
FPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ
CCCCEEEEECCCCCCHHHHHHHHHHCCHHEEEECCCC
>Mature Secondary Structure 
TAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEAN
CCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCEEECCCCCEEEEECCC
HPEALHLSENVYRIDPLEHLSGKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGW
CCCEEEECCCEEEECCHHHCCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
IERIQKSGGKVDVVLMENVEEFAGWGPLIETDKGLMPCPERKGETFEAWCKKIRSLGGKL
HHHHHHCCCCEEEEEECCHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHH
ERRELRGCDYGAPTIRKRLFVAIRFDGEPVSWPTPTHGDPNSAEVKSGKLKPWRTAAECI
HHHHHCCCCCCCHHHCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
DWSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGLHRYVLQAERPFLVNLTHGGR
CCCCCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
VEDVAEPFKTITGANRGEKAIVAPSLVSVAHGDSGGRRKYPLTDPYGVVTAGGVSNALIA
HHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHC
PSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVLAPYLATMRNSLKPWQEVTKP
CHHHHHCCCCCCCHHCCCHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCC
THTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGA
CEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC
NRSMLDPHHTICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPV
CCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHH
AAFFAKYYGTGDGARADAPLHTITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDH
HHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
GLWDEREFVTLEIEGQAFIIVDVGMRMLTPRELFNAQGFPADYVIEGIWKQESDDWTFST
CCCCCCEEEEEEECCCEEEEEECCHHHCCHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEC
FPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ
CCCCEEEEECCCCCCHHHHHHHHHHCCHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA