| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081478
Identifier: 99081478
GI number: 99081478
Start: 1742333
End: 1743016
Strand: Direct
Name: 99081478
Synonym: TM1040_1637
Alternate gene names: NA
Gene position: 1742333-1743016 (Clockwise)
Preceding gene: 99081477
Following gene: 99081480
Centisome position: 54.43
GC content: 51.02
Gene sequence:
>684_bases TTGAAAATATTCAACATGCCAGAGAAAAGTCATCAGAGGTATGTGACTTGGCTAGAGCGCCGGGTTACCGAGCACTGCTA TACCCATCAAGTGAGTCTCAATGACGCTTCGAAGAGAACCGGGAACAGCAGAAGCTTTCTGTCCAGCCTCTTCAAACGGC AAAGCGACATAGGGATCGGCCGATTTTTCAGAATATGTGAGGCACTGTCAATCAAACCCGACGCTCAGCTCCTCGATATC GCCGAAGGCAACGCCCCCTCCATCGATGAGGTAACGGATCTTGTAGCCCTCCGAACAAACAGCCCACTACCTACAACAAT TCTTGATTTTATAGTCATCTACGCAGTTCCCGAGCCTGACGACACTACCCTCTCACTCCTACACCTCGGTGAAAAAAGCC TCGCAGCACGCGTATTGCCGATCCAATCGAACGACATGCTTCAAAGGGCGGTGGATAATTTTCCCGCCGCCGATCGCAAG AAGCTTGTCACTTCTTACCAACTCGCTGGGAAAGGTACCTGCCTTATTTCGATTGAAACCCTTGCAACACACGTGCACGG CCAGCCCGAAGTAAACGAACTCATGTATAAGCGCCTGCTATTCCCGGTCAAAGATTTCAATGGCAAACCAGCCGTCGGCG TCTATGCAATACCAGCGTCTAGTCGCGCCAACTCCAGCACTTGA
Upstream 100 bases:
>100_bases GTTTGAAATCCAGTAAATCACTCAGATTTCCCTCAAAATACAACCATAGCACGATAGAAGCACTACGCGCTCTGCCTATG TCAAAATCAATCTTAGCTCA
Downstream 100 bases:
>100_bases TCACGCCGCGAGAAGCAGCAAGCCTCGTGACTACCCCTGCCTTCTGGGAAGGGCTGAGACCAAACCTGAGCCTGCGGAAT GCAGGACATCAAGCCCAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 227; Mature: 227
Protein sequence:
>227_residues MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIGRFFRICEALSIKPDAQLLDI AEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPDDTTLSLLHLGEKSLAARVLPIQSNDMLQRAVDNFPAADRK KLVTSYQLAGKGTCLISIETLATHVHGQPEVNELMYKRLLFPVKDFNGKPAVGVYAIPASSRANSST
Sequences:
>Translated_227_residues MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIGRFFRICEALSIKPDAQLLDI AEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPDDTTLSLLHLGEKSLAARVLPIQSNDMLQRAVDNFPAADRK KLVTSYQLAGKGTCLISIETLATHVHGQPEVNELMYKRLLFPVKDFNGKPAVGVYAIPASSRANSST >Mature_227_residues MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIGRFFRICEALSIKPDAQLLDI AEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPDDTTLSLLHLGEKSLAARVLPIQSNDMLQRAVDNFPAADRK KLVTSYQLAGKGTCLISIETLATHVHGQPEVNELMYKRLLFPVKDFNGKPAVGVYAIPASSRANSST
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25243; Mature: 25243
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIG CCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCHHHCCCCHHHHHHHHHHHHCCCCHH RFFRICEALSIKPDAQLLDIAEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPD HHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCC DTTLSLLHLGEKSLAARVLPIQSNDMLQRAVDNFPAADRKKLVTSYQLAGKGTCLISIET CCEEHHHHHCCHHHHEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEHHH LATHVHGQPEVNELMYKRLLFPVKDFNGKPAVGVYAIPASSRANSST HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC >Mature Secondary Structure MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIG CCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCHHHCCCCHHHHHHHHHHHHCCCCHH RFFRICEALSIKPDAQLLDIAEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPD HHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCC DTTLSLLHLGEKSLAARVLPIQSNDMLQRAVDNFPAADRKKLVTSYQLAGKGTCLISIET CCEEHHHHHCCHHHHEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEHHH LATHVHGQPEVNELMYKRLLFPVKDFNGKPAVGVYAIPASSRANSST HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA