| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081472
Identifier: 99081472
GI number: 99081472
Start: 1738333
End: 1739175
Strand: Reverse
Name: 99081472
Synonym: TM1040_1631
Alternate gene names: NA
Gene position: 1739175-1738333 (Counterclockwise)
Preceding gene: 99081473
Following gene: 99081471
Centisome position: 54.33
GC content: 60.02
Gene sequence:
>843_bases GTGAAAGATGGGTTTGATCTAGTGGACACAGGAGATCCATTCGACACGATCACGCCGGTCATCCCGATTTCGGATCGGCC GCGATCGCAGTCGGTGGTCGCAGGAACGCTGAACGACCCGTATCGCCGCCAGGCGGTGGCCGATGCGCGCAGCCTGTGGC GTAAGTCAATCCCCGGATCGCGCGGCGTCGTTGCTGCCTATCTTGCCTCGCAGGGCATCCAGTTGGATGAAATTCCTGCA AATCTCCGGTTCGTGCTTGACCATCCGTACATGAAGAAATCCGGAGGCCTATACCATGAGCTACATCGCGGGCCTTGTGT CCTCGGCGGGATCTTCTCTGAGGCAGGCCAGCTGCTTGGCGTCAACCAAATTTGGGTTGATCCAAAGCCGCCGCATGGGC GCGCAAGCATTCAAATGGACGGGGACCATATGCCTGCAGAGATCGTGCGCGGATCCTGTAAAGGGGGATTCCTGCCGCTG GTTTGGCCAGAGGCAGCCACGGCTCTGGTAGTAGCACGTAGCCTGGAAGCGGCCCTGCGCGCCTATGCGTCACGCCCATC CGGGCTAGAGGATGCGGCCTATTGGGCTGTTGTGGATCTCAAGGTGATGTCCGGCAAGATGCAGCGGCAGAAGGGTGTTC GATACTCGGGCCTGCCTGATCTGTCAGATGATACCTCATTCGTCGCGCCGCATTGGGTGAAGCGCCTCGTGTTCCTTCAG GAAGATGACAGGACTGGCACTCGGCAGAAGCTCGAAAGTGGTCTGAAGCGCTCGATGCACGTTCGCCCCGGCTTACGGGC GTCGATCGTGCGGATCGGCTCCGCTGCGAAGGGTGGAGTGTAA
Upstream 100 bases:
>100_bases AGCGTCTGTTCGTCGCCTTCTGGGAAGTCATGGCGGATGCGGATCGGCGCAAGTTTTTGGAAAGGGCCGATCCGGCCGGA ACTTTCTATAAGGTGAAACC
Downstream 100 bases:
>100_bases CCCATGCAGATCGAATTCCTGTGTCCCGATGATGCCAGACAGGCCGAACATATCAGCGAGACTGCAGAGGAATTCTACGC CTCACGGCGTCCAGATCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MKDGFDLVDTGDPFDTITPVIPISDRPRSQSVVAGTLNDPYRRQAVADARSLWRKSIPGSRGVVAAYLASQGIQLDEIPA NLRFVLDHPYMKKSGGLYHELHRGPCVLGGIFSEAGQLLGVNQIWVDPKPPHGRASIQMDGDHMPAEIVRGSCKGGFLPL VWPEAATALVVARSLEAALRAYASRPSGLEDAAYWAVVDLKVMSGKMQRQKGVRYSGLPDLSDDTSFVAPHWVKRLVFLQ EDDRTGTRQKLESGLKRSMHVRPGLRASIVRIGSAAKGGV
Sequences:
>Translated_280_residues MKDGFDLVDTGDPFDTITPVIPISDRPRSQSVVAGTLNDPYRRQAVADARSLWRKSIPGSRGVVAAYLASQGIQLDEIPA NLRFVLDHPYMKKSGGLYHELHRGPCVLGGIFSEAGQLLGVNQIWVDPKPPHGRASIQMDGDHMPAEIVRGSCKGGFLPL VWPEAATALVVARSLEAALRAYASRPSGLEDAAYWAVVDLKVMSGKMQRQKGVRYSGLPDLSDDTSFVAPHWVKRLVFLQ EDDRTGTRQKLESGLKRSMHVRPGLRASIVRIGSAAKGGV >Mature_280_residues MKDGFDLVDTGDPFDTITPVIPISDRPRSQSVVAGTLNDPYRRQAVADARSLWRKSIPGSRGVVAAYLASQGIQLDEIPA NLRFVLDHPYMKKSGGLYHELHRGPCVLGGIFSEAGQLLGVNQIWVDPKPPHGRASIQMDGDHMPAEIVRGSCKGGFLPL VWPEAATALVVARSLEAALRAYASRPSGLEDAAYWAVVDLKVMSGKMQRQKGVRYSGLPDLSDDTSFVAPHWVKRLVFLQ EDDRTGTRQKLESGLKRSMHVRPGLRASIVRIGSAAKGGV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30474; Mature: 30474
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDGFDLVDTGDPFDTITPVIPISDRPRSQSVVAGTLNDPYRRQAVADARSLWRKSIPGS CCCCCCCCCCCCCHHHCCCEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCC RGVVAAYLASQGIQLDEIPANLRFVLDHPYMKKSGGLYHELHRGPCVLGGIFSEAGQLLG CCHHHHHHHHCCCEEECCCCCEEEEECCCCHHHCCCHHHHHCCCCEEEHHHHHHCCCEEC VNQIWVDPKPPHGRASIQMDGDHMPAEIVRGSCKGGFLPLVWPEAATALVVARSLEAALR CCEEEECCCCCCCCEEEEECCCCCCHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHH AYASRPSGLEDAAYWAVVDLKVMSGKMQRQKGVRYSGLPDLSDDTSFVAPHWVKRLVFLQ HHHCCCCCCCHHHEEEEEEHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHEE EDDRTGTRQKLESGLKRSMHVRPGLRASIVRIGSAAKGGV CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCC >Mature Secondary Structure MKDGFDLVDTGDPFDTITPVIPISDRPRSQSVVAGTLNDPYRRQAVADARSLWRKSIPGS CCCCCCCCCCCCCHHHCCCEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCC RGVVAAYLASQGIQLDEIPANLRFVLDHPYMKKSGGLYHELHRGPCVLGGIFSEAGQLLG CCHHHHHHHHCCCEEECCCCCEEEEECCCCHHHCCCHHHHHCCCCEEEHHHHHHCCCEEC VNQIWVDPKPPHGRASIQMDGDHMPAEIVRGSCKGGFLPLVWPEAATALVVARSLEAALR CCEEEECCCCCCCCEEEEECCCCCCHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHH AYASRPSGLEDAAYWAVVDLKVMSGKMQRQKGVRYSGLPDLSDDTSFVAPHWVKRLVFLQ HHHCCCCCCCHHHEEEEEEHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHEE EDDRTGTRQKLESGLKRSMHVRPGLRASIVRIGSAAKGGV CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA