| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081404
Identifier: 99081404
GI number: 99081404
Start: 1669877
End: 1670569
Strand: Reverse
Name: 99081404
Synonym: TM1040_1563
Alternate gene names: NA
Gene position: 1670569-1669877 (Counterclockwise)
Preceding gene: 99081405
Following gene: 99081394
Centisome position: 52.19
GC content: 60.89
Gene sequence:
>693_bases ATGCTGGATTGGTTTGCAAAACGAAATGCCTCCCCGATGGCAGAGGCGTTCACAACCGAATTTCCGATGGTCGCAACTGG CCAGGCAGGGTTTCTCTCAGGGACCATGGTCGCGACCGCAACCGGCTGGCGCCCCGTCGAAGCGCTCTCCATCGGTGACG AGGTTCTGACCTTCGATCACGGCATGCGTCCGATCAAATCCATTACCCGTCGCACCCTGGTTCTGGGCGACACCGCCTGC GCCCAGGAAATGGCGCCGATCTATATCCCCCGTGATGCACTGGGCAACCGCAACCCGATGTGGGTCAAGCCAGAGCAGGG CATCCTCCTCGAGCATGATCTTCTTGAAGACAGCCTTGGTGATCCCTTCGCCGTTGTTCCGGCTTGCGCACTTGAAGGCT ACCGCGGTATTGCCCGCGCCCCGCAGCAGGTGACCATGCAGACCGTGGTGCTTACCTTTGACGAGGACGAAGTGCTCTAT ATCGAAGCGGGCGTGCTGGCCTATTGCCCGGCAGATCACGACCTGATGCACTACTGCGTGACCGCCGCCTCCGAAGAGCT CTACACAATCCTCTCCGCCGCCGAGGCGCGTGAGCTGGTCATCGACATGATCACCGAAGACAGCTTCTGGACCCAAGGGG CGGTTGCTGGCAGCGGTGGCACAGGTGAGCCGCAGTATACGACCTTCGCCTGA
Upstream 100 bases:
>100_bases CCCAGGCCCGACCGATTTGCTACAAAGGCTTCACGGAACGGCGATTGGAGCTTCGAGCCCCTGAGGTCCGGAGCAACATC AAGGTCGAAAGGACAGGAAC
Downstream 100 bases:
>100_bases TCCCCAAACGCTCTCTCTCACACCTCCTGAGCAAACACCCCGCGCGCCGCTTGGTCGGCTGCGGGGTGTTTTCATGTTGG AGCACGCGCTTGTTTTCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDHGMRPIKSITRRTLVLGDTAC AQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLGDPFAVVPACALEGYRGIARAPQQVTMQTVVLTFDEDEVLY IEAGVLAYCPADHDLMHYCVTAASEELYTILSAAEARELVIDMITEDSFWTQGAVAGSGGTGEPQYTTFA
Sequences:
>Translated_230_residues MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDHGMRPIKSITRRTLVLGDTAC AQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLGDPFAVVPACALEGYRGIARAPQQVTMQTVVLTFDEDEVLY IEAGVLAYCPADHDLMHYCVTAASEELYTILSAAEARELVIDMITEDSFWTQGAVAGSGGTGEPQYTTFA >Mature_230_residues MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDHGMRPIKSITRRTLVLGDTAC AQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLGDPFAVVPACALEGYRGIARAPQQVTMQTVVLTFDEDEVLY IEAGVLAYCPADHDLMHYCVTAASEELYTILSAAEARELVIDMITEDSFWTQGAVAGSGGTGEPQYTTFA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25003; Mature: 25003
Theoretical pI: Translated: 4.08; Mature: 4.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDH CCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCEEEEECCCCEEECCC GMRPIKSITRRTLVLGDTACAQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLG CCHHHHHHHHHEEEECCHHHHHHCCCEEECHHHCCCCCCEEECCCCCEEEEHHHHHHHCC DPFAVVPACALEGYRGIARAPQQVTMQTVVLTFDEDEVLYIEAGVLAYCPADHDLMHYCV CCCHHHHHHHHHCCHHHHCCCHHEEEEEEEEEECCCCEEEEECCEEEECCCCHHHHHHHH TAASEELYTILSAAEARELVIDMITEDSFWTQGAVAGSGGTGEPQYTTFA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEECC >Mature Secondary Structure MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDH CCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCEEEEECCCCEEECCC GMRPIKSITRRTLVLGDTACAQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLG CCHHHHHHHHHEEEECCHHHHHHCCCEEECHHHCCCCCCEEECCCCCEEEEHHHHHHHCC DPFAVVPACALEGYRGIARAPQQVTMQTVVLTFDEDEVLYIEAGVLAYCPADHDLMHYCV CCCHHHHHHHHHCCHHHHCCCHHEEEEEEEEEECCCCEEEEECCEEEECCCCHHHHHHHH TAASEELYTILSAAEARELVIDMITEDSFWTQGAVAGSGGTGEPQYTTFA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA