| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081347
Identifier: 99081347
GI number: 99081347
Start: 1610887
End: 1612149
Strand: Reverse
Name: 99081347
Synonym: TM1040_1506
Alternate gene names: NA
Gene position: 1612149-1610887 (Counterclockwise)
Preceding gene: 99081348
Following gene: 99081345
Centisome position: 50.36
GC content: 60.02
Gene sequence:
>1263_bases ATGACGGATAAGGATCAAACTGAGGAAGGCAATCGCGCGGTCGGGGGACTGGCGCGCAAACTTGCAGCCTCAAAAGAGGG CACTGCCGGGACAGGCGGCTCGCTCACGCTCAAGGCCTTGCGCAGATCGGTGGCGCGGGCTGCCGAGGATCTGTGCGAAT TGCCCATGGCAGTGATCGCGGCACGTCAGACCAACCGCGTGCCCGAGGATCTGACCGGCCTTCTTTCCGATAAACACCTC CTTGTGGTTCTGGATTGCCCTGCAGGACGGATTGGTGCTGCGACACTGGATGCGGCGGCGGTTACAGCTCTGATTCAACA GCAGACCATGGGTACCGTGCTGGGCATGTCCGGGGATGAGCGCAATTATACGCCCACGGACGCCGCCATGGTGGCGGAAT TCCTTGAAAAGCTGTTTGCCAAGGTCTCGAGCCTGCTCGAAGACCAGACCGACCTGAGCATCTTCGAAGGCTATCGCTTT GGCGCGCAGGTCGAAGATGTGCGCACACTTGTGCTCGGTATGGAAGCCGAGGATTACCGGGTCATCAATCTCAACGTCGA TCTCGCCACTGGCAAGATGCAGGGCGAAATCTGTCTGGTTCTGCCGGAACCGTCTGTCGATGAATATGACGAGGCCAATG CGATCCGTGGCCCGCGTCTGGGGTCGAGCGTTGGCTCCATGCGGGCGGAACTGACGGCGGTCCTGTGCAAGATGCGCGTG CCTTTGCGCCAGTTCTCCACCCTCAAAGTGGGAGAGCTCTTGCCGCTCGATCAGGCCTATCTCTACGAGACCGATTTGAT TGCCATCAATGGTCAGGCCATTGCAAAGGGACGGTTGGGGCAGATGAATGGCGCGCGTGCCGTGCGTCTGGATCAGCAGC GCACCCGTCTTGTGCCTCATAACGAAGGCAGTTTTTCCGACGGGATCGGTCATGGTGGGGCGCCCGCGCTCGAAGACAAC ACGCTTGATCTCTCGATTGCCGCGCATGGTCTGCAGGAACCCGGTGATGGCCTTGGTGGCGATCTCGGTGGCATGATGGG CGGCGACCTAGGTGTCGATTTGGGCGGTGATCTTGGCGGCGACCTCGGAGGCGATTTTGGCGGCGGCCTTGAAGGGGGCG ACTTGCCCATGGGCGATTTTGACGCCATGGGAGAGCTGCCCGAACTGCCCATGAATGACCTTGGTGATTTTAACGCCGAT GACACGGCGGCCGAGATCTCGGAGCTTGCTGGTCTGTCTGATCTTTCAGAGACCGGAACATAA
Upstream 100 bases:
>100_bases ACGAAAATAGAAGAAATCCTCTGAAATTTGTAAAGGTCTTGGTAACCAGCGCTGGGATAGAACCGTCTGCATACGGGTGC GGAAGGCTTCGGGTTCATTT
Downstream 100 bases:
>100_bases CCACAGCGCCGCGGGGCGCATCAGCTCTCTTGGAAAAATATGGCCCACGGTGGACACCGCGGGCCGTCATTGCGACTGAT CTTCGTCAGGGCGTTTCCTT
Product: surface presentation of antigens (SPOA) protein
Products: NA
Alternate protein names: Surface Presentation Of Antigens Protein Family
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MTDKDQTEEGNRAVGGLARKLAASKEGTAGTGGSLTLKALRRSVARAAEDLCELPMAVIAARQTNRVPEDLTGLLSDKHL LVVLDCPAGRIGAATLDAAAVTALIQQQTMGTVLGMSGDERNYTPTDAAMVAEFLEKLFAKVSSLLEDQTDLSIFEGYRF GAQVEDVRTLVLGMEAEDYRVINLNVDLATGKMQGEICLVLPEPSVDEYDEANAIRGPRLGSSVGSMRAELTAVLCKMRV PLRQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQQRTRLVPHNEGSFSDGIGHGGAPALEDN TLDLSIAAHGLQEPGDGLGGDLGGMMGGDLGVDLGGDLGGDLGGDFGGGLEGGDLPMGDFDAMGELPELPMNDLGDFNAD DTAAEISELAGLSDLSETGT
Sequences:
>Translated_420_residues MTDKDQTEEGNRAVGGLARKLAASKEGTAGTGGSLTLKALRRSVARAAEDLCELPMAVIAARQTNRVPEDLTGLLSDKHL LVVLDCPAGRIGAATLDAAAVTALIQQQTMGTVLGMSGDERNYTPTDAAMVAEFLEKLFAKVSSLLEDQTDLSIFEGYRF GAQVEDVRTLVLGMEAEDYRVINLNVDLATGKMQGEICLVLPEPSVDEYDEANAIRGPRLGSSVGSMRAELTAVLCKMRV PLRQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQQRTRLVPHNEGSFSDGIGHGGAPALEDN TLDLSIAAHGLQEPGDGLGGDLGGMMGGDLGVDLGGDLGGDLGGDFGGGLEGGDLPMGDFDAMGELPELPMNDLGDFNAD DTAAEISELAGLSDLSETGT >Mature_419_residues TDKDQTEEGNRAVGGLARKLAASKEGTAGTGGSLTLKALRRSVARAAEDLCELPMAVIAARQTNRVPEDLTGLLSDKHLL VVLDCPAGRIGAATLDAAAVTALIQQQTMGTVLGMSGDERNYTPTDAAMVAEFLEKLFAKVSSLLEDQTDLSIFEGYRFG AQVEDVRTLVLGMEAEDYRVINLNVDLATGKMQGEICLVLPEPSVDEYDEANAIRGPRLGSSVGSMRAELTAVLCKMRVP LRQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQQRTRLVPHNEGSFSDGIGHGGAPALEDNT LDLSIAAHGLQEPGDGLGGDLGGMMGGDLGVDLGGDLGGDLGGDFGGGLEGGDLPMGDFDAMGELPELPMNDLGDFNADD TAAEISELAGLSDLSETGT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43922; Mature: 43791
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDKDQTEEGNRAVGGLARKLAASKEGTAGTGGSLTLKALRRSVARAAEDLCELPMAVIA CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ARQTNRVPEDLTGLLSDKHLLVVLDCPAGRIGAATLDAAAVTALIQQQTMGTVLGMSGDE HHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC RNYTPTDAAMVAEFLEKLFAKVSSLLEDQTDLSIFEGYRFGAQVEDVRTLVLGMEAEDYR CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCEE VINLNVDLATGKMQGEICLVLPEPSVDEYDEANAIRGPRLGSSVGSMRAELTAVLCKMRV EEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC PLRQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQQRTRLVPH CHHHHCCCCCCCCCCCCHHHEEECEEEEECCCEEECCCCCCCCCCEEEEECHHHHHCCCC NEGSFSDGIGHGGAPALEDNTLDLSIAAHGLQEPGDGLGGDLGGMMGGDLGVDLGGDLGG CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHCCCCCCCCEECCCCCCC DLGGDFGGGLEGGDLPMGDFDAMGELPELPMNDLGDFNADDTAAEISELAGLSDLSETGT CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCHHHHHCCC >Mature Secondary Structure TDKDQTEEGNRAVGGLARKLAASKEGTAGTGGSLTLKALRRSVARAAEDLCELPMAVIA CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ARQTNRVPEDLTGLLSDKHLLVVLDCPAGRIGAATLDAAAVTALIQQQTMGTVLGMSGDE HHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC RNYTPTDAAMVAEFLEKLFAKVSSLLEDQTDLSIFEGYRFGAQVEDVRTLVLGMEAEDYR CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCEE VINLNVDLATGKMQGEICLVLPEPSVDEYDEANAIRGPRLGSSVGSMRAELTAVLCKMRV EEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC PLRQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQQRTRLVPH CHHHHCCCCCCCCCCCCHHHEEECEEEEECCCEEECCCCCCCCCCEEEEECHHHHHCCCC NEGSFSDGIGHGGAPALEDNTLDLSIAAHGLQEPGDGLGGDLGGMMGGDLGVDLGGDLGG CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHCCCCCCCCEECCCCCCC DLGGDFGGGLEGGDLPMGDFDAMGELPELPMNDLGDFNADDTAAEISELAGLSDLSETGT CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA