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The map label for this gene is yhjC [H]

Identifier: 99081319

GI number: 99081319

Start: 1578515

End: 1579444

Strand: Direct

Name: yhjC [H]

Synonym: TM1040_1478

Alternate gene names: 99081319

Gene position: 1578515-1579444 (Clockwise)

Preceding gene: 99081314

Following gene: 99081321

Centisome position: 49.31

GC content: 61.08

Gene sequence:

>930_bases
ATGGACCGGCTGTCGCTACTTGAAACCCTCATCGTGGCCCTGGACGAAGGCAGCCTTAATCGCGCTGCCGCCCGCAAATC
CATGACCCAGTCCGCGGTCAGCCAACACATCAAGCAGTTGGAGACGCTGATGGGGCACCAGTTGCTACATCGCACAGCCC
AAGGCGTGCGCGCCACGCGCTCTGGCGAGCTGGTCTACACTCACGCCCAGAGGTTGCTTGGCAATTTTGACCGCATGACC
GCGGAGCTCGATCAGCTACAAGACAGCCTCTCCGGCGATTTTCGCATCAGCGTGAACAGCTTTCTTGGCCGTCACCTGAT
TGGGCACATGTTGGTGGAGCTCGACCAGAGCCATGATGATCTGAACATCATCCTGCGGGTCGAGGACAGGTTGGTCGACG
TGGTGCGGGAGAACTACGATCTCGCCATCCGCACCGGGCGGCTTGGCGAAACGGATGGGGTTGGGCGGCGGATCGCAACC
ATGGAGACAGTGCTTTTGGCGACGCCTGCCTACCTCGATCAGATGGGGCGCCCCGAAAGCCCCGAAGACCTGAAGCGGTT
GAAATACATCCAGCACCACGAGGATCAGACCAACGGGTTCTTCCCCCTCAGCCGGGGTGGCGAACAGGTTCTGGCGCCGA
TCCGCGTGGGGTTCACGGCTGATGATCCCGATCTGATCCGCCATGCGGTCACCAACGGCACCGGCTATACCCGCATGCCG
CTGTTCTTTGTGAAGGAAATGCTGGACGCGGGCGAATATGAACGTGTGCTGCCCGACTGGGACGCCCCGGACAAGGATGT
GTTTGCCGTCTACCCCTCTCGCCATGGCGTCGATCGCAGACGCGAATTGGTGATCGAGGGTGTCGTGGCCACATTCGAAG
CCTTTCGCAATCGCCAGCCAAAACCGCACCTCAGGGCCGTCGGCGCCTAA

Upstream 100 bases:

>100_bases
TCAGCGAAAGCACCGACAAATGCGAGATAGAGTTTAACGCTGGTACTCTACAGTCCCGGAGAGCTAATAAGGGGTATTAG
CATTTGCGATAGGAGCGCTG

Downstream 100 bases:

>100_bases
GCCCCGCCGTTACCCGCCATCAAACGGCTGTTGGGAATGTCGGCTGTTTCGGCCATCAATCACTAAATGAGTGTTAGATG
TCAGCGGGATGCAACGGCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDRLSLLETLIVALDEGSLNRAAARKSMTQSAVSQHIKQLETLMGHQLLHRTAQGVRATRSGELVYTHAQRLLGNFDRMT
AELDQLQDSLSGDFRISVNSFLGRHLIGHMLVELDQSHDDLNIILRVEDRLVDVVRENYDLAIRTGRLGETDGVGRRIAT
METVLLATPAYLDQMGRPESPEDLKRLKYIQHHEDQTNGFFPLSRGGEQVLAPIRVGFTADDPDLIRHAVTNGTGYTRMP
LFFVKEMLDAGEYERVLPDWDAPDKDVFAVYPSRHGVDRRRELVIEGVVATFEAFRNRQPKPHLRAVGA

Sequences:

>Translated_309_residues
MDRLSLLETLIVALDEGSLNRAAARKSMTQSAVSQHIKQLETLMGHQLLHRTAQGVRATRSGELVYTHAQRLLGNFDRMT
AELDQLQDSLSGDFRISVNSFLGRHLIGHMLVELDQSHDDLNIILRVEDRLVDVVRENYDLAIRTGRLGETDGVGRRIAT
METVLLATPAYLDQMGRPESPEDLKRLKYIQHHEDQTNGFFPLSRGGEQVLAPIRVGFTADDPDLIRHAVTNGTGYTRMP
LFFVKEMLDAGEYERVLPDWDAPDKDVFAVYPSRHGVDRRRELVIEGVVATFEAFRNRQPKPHLRAVGA
>Mature_309_residues
MDRLSLLETLIVALDEGSLNRAAARKSMTQSAVSQHIKQLETLMGHQLLHRTAQGVRATRSGELVYTHAQRLLGNFDRMT
AELDQLQDSLSGDFRISVNSFLGRHLIGHMLVELDQSHDDLNIILRVEDRLVDVVRENYDLAIRTGRLGETDGVGRRIAT
METVLLATPAYLDQMGRPESPEDLKRLKYIQHHEDQTNGFFPLSRGGEQVLAPIRVGFTADDPDLIRHAVTNGTGYTRMP
LFFVKEMLDAGEYERVLPDWDAPDKDVFAVYPSRHGVDRRRELVIEGVVATFEAFRNRQPKPHLRAVGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=29.1946308724832, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=24.3150684931507, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789440, Length=266, Percent_Identity=27.4436090225564, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=28.6206896551724, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786401, Length=275, Percent_Identity=23.2727272727273, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787589, Length=273, Percent_Identity=28.9377289377289, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787128, Length=276, Percent_Identity=26.0869565217391, Blast_Score=94, Evalue=8e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34886; Mature: 34886

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLSLLETLIVALDEGSLNRAAARKSMTQSAVSQHIKQLETLMGHQLLHRTAQGVRATR
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SGELVYTHAQRLLGNFDRMTAELDQLQDSLSGDFRISVNSFLGRHLIGHMLVELDQSHDD
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC
LNIILRVEDRLVDVVRENYDLAIRTGRLGETDGVGRRIATMETVLLATPAYLDQMGRPES
EEEEEEEHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCC
PEDLKRLKYIQHHEDQTNGFFPLSRGGEQVLAPIRVGFTADDPDLIRHAVTNGTGYTRMP
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHEEEHHEECCCCCCHHHHHHHHHCCCCCCHHH
LFFVKEMLDAGEYERVLPDWDAPDKDVFAVYPSRHGVDRRRELVIEGVVATFEAFRNRQP
HHHHHHHHCCCCCHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
KPHLRAVGA
CCCHHCCCC
>Mature Secondary Structure
MDRLSLLETLIVALDEGSLNRAAARKSMTQSAVSQHIKQLETLMGHQLLHRTAQGVRATR
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SGELVYTHAQRLLGNFDRMTAELDQLQDSLSGDFRISVNSFLGRHLIGHMLVELDQSHDD
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC
LNIILRVEDRLVDVVRENYDLAIRTGRLGETDGVGRRIATMETVLLATPAYLDQMGRPES
EEEEEEEHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCC
PEDLKRLKYIQHHEDQTNGFFPLSRGGEQVLAPIRVGFTADDPDLIRHAVTNGTGYTRMP
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHEEEHHEECCCCCCHHHHHHHHHCCCCCCHHH
LFFVKEMLDAGEYERVLPDWDAPDKDVFAVYPSRHGVDRRRELVIEGVVATFEAFRNRQP
HHHHHHHHCCCCCHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
KPHLRAVGA
CCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]