Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081286

Identifier: 99081286

GI number: 99081286

Start: 1543768

End: 1544442

Strand: Reverse

Name: 99081286

Synonym: TM1040_1445

Alternate gene names: NA

Gene position: 1544442-1543768 (Counterclockwise)

Preceding gene: 99081287

Following gene: 99081285

Centisome position: 48.25

GC content: 60.89

Gene sequence:

>675_bases
ATGACAAATGACAGCATCAAGTCTGAGACAGAGGTCGCGCCGCGCGATCAGAGCGCGGTTGGAACAATTCCTTGGGCGAT
CAAGGGCGAGTTGATCCTGAACTGCAACTGCACCGTGTTCTGCCCCTGCGTCGTGTCGCTGGGCAAGCACCCGCCGACCG
AGGGCTACTGCCAGGCCTGGGCTGGCGTACGCATCGACGAAGGCCATTACGGCGATGCAGACCTTTCGGGATTGAATGTC
GGGCTTGTGCTGGAGATTCCGGGTCTCATGGCGCGCGGCAACTGGAAGGCCGCCGCCTATATCGACGAACGCGCCAGCGA
CGCGGCCTATGAGGGGCTGATCGATGTTTTCTCTGGAAAAGCAAGAGGTACCACCGGTCTCTTCAAAGTGCTCGTCAGCG
AATTCCTCGGCGCCGAACGCGCACCGGTGCTGTTTGAGACTGAGGGTAAGACCCGGCGTCTGATCGTGGGCAAGCAGATC
CACGGCGAAGTGGTTCCGGTAGGTGGTGCCGACAGCGACCAGGACATCGTGGTGACCAATACCGAGTATTGGATGGGCCC
CGATATCACCGTTGCAACCGCCACCAAGGGGCGTGTGCGCGCCTTTGGTCGTGTCTGGGATTTTGACGGCCGCTCTGCCG
AGATCTGCCAGATCGATTGGAAGGGGCCGCGCTGA

Upstream 100 bases:

>100_bases
CGAAATCGGGCGCTGGTTGACCCGCCCAATGGGCGTGATCCTCTGCGCAAGCGGTCTTTGGGTTCTGATGACATCTATCT
GAATTTGGAGGAGAATTCAC

Downstream 100 bases:

>100_bases
CGCGCAGCACCTACGTGACCGAGCGGCGGTCGCGTCGTGATGCGCCGCTCGCCCTCAACTCATGGTATGAAAGGGTTTGC
CATGACCGTTCTGAAACCTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAWAGVRIDEGHYGDADLSGLNV
GLVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGKARGTTGLFKVLVSEFLGAERAPVLFETEGKTRRLIVGKQI
HGEVVPVGGADSDQDIVVTNTEYWMGPDITVATATKGRVRAFGRVWDFDGRSAEICQIDWKGPR

Sequences:

>Translated_224_residues
MTNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAWAGVRIDEGHYGDADLSGLNV
GLVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGKARGTTGLFKVLVSEFLGAERAPVLFETEGKTRRLIVGKQI
HGEVVPVGGADSDQDIVVTNTEYWMGPDITVATATKGRVRAFGRVWDFDGRSAEICQIDWKGPR
>Mature_223_residues
TNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAWAGVRIDEGHYGDADLSGLNVG
LVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGKARGTTGLFKVLVSEFLGAERAPVLFETEGKTRRLIVGKQIH
GEVVPVGGADSDQDIVVTNTEYWMGPDITVATATKGRVRAFGRVWDFDGRSAEICQIDWKGPR

Specific function: Unknown

COG id: COG5588

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24190; Mature: 24058

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAW
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCEEEEHHHHHHCCCCCCCHHHHHH
AGVRIDEGHYGDADLSGLNVGLVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGK
CCCEEECCCCCCCCCCCCCEEEEEECCCEEECCCCEEEEEECCCCCHHHHHHHHHHHCCC
ARGTTGLFKVLVSEFLGAERAPVLFETEGKTRRLIVGKQIHGEVVPVGGADSDQDIVVTN
CCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCEEEEC
TEYWMGPDITVATATKGRVRAFGRVWDFDGRSAEICQIDWKGPR
CCEEECCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
TNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAW
CCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCEEEEHHHHHHCCCCCCCHHHHHH
AGVRIDEGHYGDADLSGLNVGLVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGK
CCCEEECCCCCCCCCCCCCEEEEEECCCEEECCCCEEEEEECCCCCHHHHHHHHHHHCCC
ARGTTGLFKVLVSEFLGAERAPVLFETEGKTRRLIVGKQIHGEVVPVGGADSDQDIVVTN
CCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCEEEEC
TEYWMGPDITVATATKGRVRAFGRVWDFDGRSAEICQIDWKGPR
CCEEECCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA