| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081286
Identifier: 99081286
GI number: 99081286
Start: 1543768
End: 1544442
Strand: Reverse
Name: 99081286
Synonym: TM1040_1445
Alternate gene names: NA
Gene position: 1544442-1543768 (Counterclockwise)
Preceding gene: 99081287
Following gene: 99081285
Centisome position: 48.25
GC content: 60.89
Gene sequence:
>675_bases ATGACAAATGACAGCATCAAGTCTGAGACAGAGGTCGCGCCGCGCGATCAGAGCGCGGTTGGAACAATTCCTTGGGCGAT CAAGGGCGAGTTGATCCTGAACTGCAACTGCACCGTGTTCTGCCCCTGCGTCGTGTCGCTGGGCAAGCACCCGCCGACCG AGGGCTACTGCCAGGCCTGGGCTGGCGTACGCATCGACGAAGGCCATTACGGCGATGCAGACCTTTCGGGATTGAATGTC GGGCTTGTGCTGGAGATTCCGGGTCTCATGGCGCGCGGCAACTGGAAGGCCGCCGCCTATATCGACGAACGCGCCAGCGA CGCGGCCTATGAGGGGCTGATCGATGTTTTCTCTGGAAAAGCAAGAGGTACCACCGGTCTCTTCAAAGTGCTCGTCAGCG AATTCCTCGGCGCCGAACGCGCACCGGTGCTGTTTGAGACTGAGGGTAAGACCCGGCGTCTGATCGTGGGCAAGCAGATC CACGGCGAAGTGGTTCCGGTAGGTGGTGCCGACAGCGACCAGGACATCGTGGTGACCAATACCGAGTATTGGATGGGCCC CGATATCACCGTTGCAACCGCCACCAAGGGGCGTGTGCGCGCCTTTGGTCGTGTCTGGGATTTTGACGGCCGCTCTGCCG AGATCTGCCAGATCGATTGGAAGGGGCCGCGCTGA
Upstream 100 bases:
>100_bases CGAAATCGGGCGCTGGTTGACCCGCCCAATGGGCGTGATCCTCTGCGCAAGCGGTCTTTGGGTTCTGATGACATCTATCT GAATTTGGAGGAGAATTCAC
Downstream 100 bases:
>100_bases CGCGCAGCACCTACGTGACCGAGCGGCGGTCGCGTCGTGATGCGCCGCTCGCCCTCAACTCATGGTATGAAAGGGTTTGC CATGACCGTTCTGAAACCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MTNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAWAGVRIDEGHYGDADLSGLNV GLVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGKARGTTGLFKVLVSEFLGAERAPVLFETEGKTRRLIVGKQI HGEVVPVGGADSDQDIVVTNTEYWMGPDITVATATKGRVRAFGRVWDFDGRSAEICQIDWKGPR
Sequences:
>Translated_224_residues MTNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAWAGVRIDEGHYGDADLSGLNV GLVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGKARGTTGLFKVLVSEFLGAERAPVLFETEGKTRRLIVGKQI HGEVVPVGGADSDQDIVVTNTEYWMGPDITVATATKGRVRAFGRVWDFDGRSAEICQIDWKGPR >Mature_223_residues TNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAWAGVRIDEGHYGDADLSGLNVG LVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGKARGTTGLFKVLVSEFLGAERAPVLFETEGKTRRLIVGKQIH GEVVPVGGADSDQDIVVTNTEYWMGPDITVATATKGRVRAFGRVWDFDGRSAEICQIDWKGPR
Specific function: Unknown
COG id: COG5588
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24190; Mature: 24058
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAW CCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCEEEEHHHHHHCCCCCCCHHHHHH AGVRIDEGHYGDADLSGLNVGLVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGK CCCEEECCCCCCCCCCCCCEEEEEECCCEEECCCCEEEEEECCCCCHHHHHHHHHHHCCC ARGTTGLFKVLVSEFLGAERAPVLFETEGKTRRLIVGKQIHGEVVPVGGADSDQDIVVTN CCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCEEEEC TEYWMGPDITVATATKGRVRAFGRVWDFDGRSAEICQIDWKGPR CCEEECCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCCC >Mature Secondary Structure TNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAW CCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCEEEEHHHHHHCCCCCCCHHHHHH AGVRIDEGHYGDADLSGLNVGLVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGK CCCEEECCCCCCCCCCCCCEEEEEECCCEEECCCCEEEEEECCCCCHHHHHHHHHHHCCC ARGTTGLFKVLVSEFLGAERAPVLFETEGKTRRLIVGKQIHGEVVPVGGADSDQDIVVTN CCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCEEEEC TEYWMGPDITVATATKGRVRAFGRVWDFDGRSAEICQIDWKGPR CCEEECCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA