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The map label for this gene is araC [C]

Identifier: 99081257

GI number: 99081257

Start: 1509244

End: 1510074

Strand: Direct

Name: araC [C]

Synonym: TM1040_1416

Alternate gene names: 99081257

Gene position: 1509244-1510074 (Clockwise)

Preceding gene: 99081256

Following gene: 99081258

Centisome position: 47.15

GC content: 61.97

Gene sequence:

>831_bases
ATGCCATTTGACCCCAAGATCCGTGGACCGCTGGACGTACGACCGCTTTTGCAGCTGATGTCCGCAGGGTCCTGGCAGGT
TGAATTGGCCCACGAGCGCGACTGCCATCTGGTGATCTGGATCACCCGCGGTCAAGGCCGCGTGTTGTTGGATGGGCAGT
GTCGCGGCTTTGGTCCTCATACGGCCCTGTGCATACCAGCGCGAACATTGTTCTCGCTCGAGTTGGGCCGACAATGCATT
GGGCAAGTCCTGCGCATCGGCGAAGACATCCCCTGCGGCCTTCCTGAAACCCCGATGCAGATCCGCATAAACGACATGCA
GGAGCAGGGGCGGATCAATGCGCTCTTTGACGCGGCCTTGCGCGAGCAGCAGGTCGCGGATGACCACACCGCCAAAGCTA
TCACGAGCTATGCTGATCTGGTGGGCATCCACCTGCAACGGCTTTGGGTCAGAGCGCCCGAGAACCGAAAACCCACGGCC
GCGCGCAGGCTCTGCCGCGCCTATTGTGCGCGGCTGGCGCAAGACGCCGAAGGGGCGTTTAACATGGCGGGCCATGCGTC
AGAGCTTGGCGTGACACCGACGCATCTGACACGCGTTTGCAAGCAGGAGACCGGAAAGACCGCCGCAGCGCTGCTCACCG
AGCGGCAGTTACACGCGGCGCGGAGCCTCCTCGCCTCGACACGTTTGCCAATGCGCGACATTGCGCAAAGTCTCGGTTTC
GGAAGCGCCGCCTATTTCACCCGTTTTATTACCCAGCACACGGGCAGCACCCCAAGCGATCTGCGCAAGAAGGCACATGG
CGCTCAGCTTGCCTCTGGTCGGAATCCCTGA

Upstream 100 bases:

>100_bases
TTTTCCGCCTGCTCTGGCCAAATCCTGCAAAGAATTTGATCGAATCAGCCGCAGGCGTCACTCTCGGGCCGATCACGCTA
GGAATTTAAGACTGCTCATA

Downstream 100 bases:

>100_bases
ATCGCCTCAGAACGCCCAGTTTCTAGACACAAGTGTCCTTTTATCAAAAGCGACGCTGATAATGTCGCATTTAGACATTT
TAATGCCGATACTGTGCATT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulatory Protein; AraC-Family Regulatory Protein; AraC/XylS Family Transcription Factor; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MPFDPKIRGPLDVRPLLQLMSAGSWQVELAHERDCHLVIWITRGQGRVLLDGQCRGFGPHTALCIPARTLFSLELGRQCI
GQVLRIGEDIPCGLPETPMQIRINDMQEQGRINALFDAALREQQVADDHTAKAITSYADLVGIHLQRLWVRAPENRKPTA
ARRLCRAYCARLAQDAEGAFNMAGHASELGVTPTHLTRVCKQETGKTAAALLTERQLHAARSLLASTRLPMRDIAQSLGF
GSAAYFTRFITQHTGSTPSDLRKKAHGAQLASGRNP

Sequences:

>Translated_276_residues
MPFDPKIRGPLDVRPLLQLMSAGSWQVELAHERDCHLVIWITRGQGRVLLDGQCRGFGPHTALCIPARTLFSLELGRQCI
GQVLRIGEDIPCGLPETPMQIRINDMQEQGRINALFDAALREQQVADDHTAKAITSYADLVGIHLQRLWVRAPENRKPTA
ARRLCRAYCARLAQDAEGAFNMAGHASELGVTPTHLTRVCKQETGKTAAALLTERQLHAARSLLASTRLPMRDIAQSLGF
GSAAYFTRFITQHTGSTPSDLRKKAHGAQLASGRNP
>Mature_275_residues
PFDPKIRGPLDVRPLLQLMSAGSWQVELAHERDCHLVIWITRGQGRVLLDGQCRGFGPHTALCIPARTLFSLELGRQCIG
QVLRIGEDIPCGLPETPMQIRINDMQEQGRINALFDAALREQQVADDHTAKAITSYADLVGIHLQRLWVRAPENRKPTAA
RRLCRAYCARLAQDAEGAFNMAGHASELGVTPTHLTRVCKQETGKTAAALLTERQLHAARSLLASTRLPMRDIAQSLGFG
SAAYFTRFITQHTGSTPSDLRKKAHGAQLASGRNP

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30383; Mature: 30252

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFDPKIRGPLDVRPLLQLMSAGSWQVELAHERDCHLVIWITRGQGRVLLDGQCRGFGPH
CCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCEEEECCCCCCCCCC
TALCIPARTLFSLELGRQCIGQVLRIGEDIPCGLPETPMQIRINDMQEQGRINALFDAAL
CEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHCCCHHHHHHHHH
REQQVADDHTAKAITSYADLVGIHLQRLWVRAPENRKPTAARRLCRAYCARLAQDAEGAF
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
NMAGHASELGVTPTHLTRVCKQETGKTAAALLTERQLHAARSLLASTRLPMRDIAQSLGF
CCCCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
GSAAYFTRFITQHTGSTPSDLRKKAHGAQLASGRNP
CHHHHHHHHHHHHCCCCHHHHHHHHHCHHCCCCCCC
>Mature Secondary Structure 
PFDPKIRGPLDVRPLLQLMSAGSWQVELAHERDCHLVIWITRGQGRVLLDGQCRGFGPH
CCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCEEEECCCCCCCCCC
TALCIPARTLFSLELGRQCIGQVLRIGEDIPCGLPETPMQIRINDMQEQGRINALFDAAL
CEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHCCCHHHHHHHHH
REQQVADDHTAKAITSYADLVGIHLQRLWVRAPENRKPTAARRLCRAYCARLAQDAEGAF
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
NMAGHASELGVTPTHLTRVCKQETGKTAAALLTERQLHAARSLLASTRLPMRDIAQSLGF
CCCCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
GSAAYFTRFITQHTGSTPSDLRKKAHGAQLASGRNP
CHHHHHHHHHHHHCCCCHHHHHHHHHCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA